Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 0.0e+00 1101.3 653 100.0
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 0.0e+00 1101.3 653 100.0
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.4e-175 619.8 671 57.1
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 3.8e-168 595.9 672 51.8
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 4.9e-168 595.5 670 51.5
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.4e-167 594.0 675 50.7
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 7.8e-166 588.2 674 51.5
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 4.0e-162 575.9 682 50.6
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.0e-161 573.5 683 50.4
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 4.9e-160 568.9 667 57.4
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 7.1e-159 565.1 665 50.1
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 3.5e-158 562.8 660 52.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 7.9e-158 561.6 665 49.9
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.8e-157 560.5 665 49.9
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.8e-157 560.5 661 53.1
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 2.8e-155 553.1 670 50.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.0e-154 548.1 673 49.8
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 9.0e-154 548.1 679 49.5
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.0e-153 547.0 663 54.8
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 5.8e-153 545.4 675 48.3
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 7.6e-153 545.0 668 52.8
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 1.0e-152 544.7 676 49.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.7e-152 543.9 676 49.6
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 3.8e-152 542.7 672 48.5
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.1e-151 541.2 671 49.0
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.2e-151 539.7 672 48.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 1.6e-150 537.3 669 48.1
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.5e-150 536.2 668 50.0
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.3e-149 534.3 692 47.3
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 2.1e-147 526.9 668 52.5
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.8e-147 526.6 662 49.4
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 4.8e-147 525.8 618 49.5
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.2e-147 525.4 660 48.3
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 2.4e-146 523.5 663 50.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 6.9e-146 521.9 689 55.7
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 1.7e-144 517.3 668 56.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.1e-142 510.4 684 46.8
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 4.6e-142 509.2 702 51.9
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 6.1e-142 508.8 665 47.7
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 6.1e-142 508.8 673 46.8
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.9e-142 508.4 703 51.8
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.6e-139 500.7 668 46.6
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.2e-139 500.4 677 45.8
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 2.4e-138 496.9 665 45.7
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 6.9e-138 495.4 640 47.8
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.9e-138 495.4 669 45.4
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 3.4e-137 493.0 673 47.0
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 4.5e-137 492.7 665 47.1
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 5.0e-136 489.2 667 46.2
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 5.0e-136 489.2 675 46.8
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 8.5e-136 488.4 640 47.0
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.1e-134 483.8 674 46.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.5e-132 477.6 659 49.2
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 7.4e-132 475.3 674 43.6
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 4.8e-131 472.6 665 44.5
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.8e-130 470.7 676 45.0
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 1.8e-130 470.7 673 45.2
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 4.1e-130 469.5 520 52.1
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.5e-129 467.6 560 48.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 2.2e-128 463.8 667 46.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.9e-128 463.4 668 46.1
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 4.2e-127 459.5 670 43.6
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 4.7e-126 456.1 679 43.7
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 2.3e-125 453.8 693 44.3
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 3.0e-125 453.4 682 45.6
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.0e-124 450.7 614 45.1
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 6.3e-123 445.7 675 43.0
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 8.2e-123 445.3 669 42.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.1e-122 444.9 675 43.1
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.1e-122 444.9 667 42.6
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 7.0e-122 442.2 682 42.8
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.2e-121 441.4 669 42.8
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.5e-121 441.0 629 45.2
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.6e-121 440.3 668 48.2
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 3.5e-121 439.9 675 42.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 5.9e-121 439.1 666 43.2
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.0e-120 438.3 665 44.4
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.7e-120 437.6 686 43.6
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 5.0e-120 436.0 686 43.4
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 5.0e-120 436.0 676 42.0
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 6.5e-120 435.6 678 44.1
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 6.5e-120 435.6 685 42.2
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 1.2e-118 431.4 668 45.8
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 3.7e-115 419.9 657 41.7
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 6.3e-115 419.1 656 47.1
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 7.0e-114 415.6 674 41.5
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 1.2e-113 414.8 673 46.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 5.0e-112 409.5 666 45.6
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.2e-111 406.8 656 42.1
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 2.4e-106 390.6 678 40.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 2.4e-106 390.6 678 40.0
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.5e-105 386.7 667 43.0
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 4.5e-105 386.3 679 38.7
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.5e-105 386.3 679 38.9
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.8e-101 374.4 643 43.4
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 4.4e-92 343.2 456 46.5
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.8e-90 337.8 467 44.5
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 1.6e-86 324.7 672 39.0
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.4e-85 321.6 621 37.8
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 8.9e-85 318.9 499 44.3
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.7e-83 314.7 405 46.7
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 8.9e-77 292.4 709 35.0
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.1e-71 275.4 476 39.5
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.4e-68 263.8 596 34.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.3e-67 261.9 361 44.0
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.0e-64 252.3 287 51.2
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.3e-64 251.9 271 53.5
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.4e-61 241.1 294 48.3
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 2.6e-36 157.9 518 28.6
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.3e-35 155.6 274 34.7
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.4e-34 152.1 331 36.6
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 4.3e-31 140.6 132 55.3
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 5.7e-31 140.2 116 62.9
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.8e-29 135.2 128 57.8
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.1e-29 134.0 174 44.8
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.2e-28 132.5 502 28.3
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.0e-27 129.4 161 51.6
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.5e-27 126.7 138 55.1
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.5e-26 123.6 195 39.0
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.9e-25 119.8 106 62.3
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-22 112.5 78 70.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.7e-19 102.1 118 50.0
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 7.2e-18 96.7 504 27.6
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.2e-17 95.9 233 41.6
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 2.1e-17 95.1 585 21.2
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.3e-16 91.7 134 42.5
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.3e-15 87.8 542 23.1
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 4.8e-14 84.0 214 34.1
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.0e-11 76.3 125 44.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 5.0e-11 73.9 83 49.4
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.0e-11 73.9 64 57.8
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 3.2e-10 71.2 76 47.4
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 2.0e-07 62.0 64 48.4
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.6e-07 61.6 67 55.2
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.4e-07 60.1 130 38.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.8e-06 58.2 66 40.9


User provided reference genes

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