Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 0.0e+00 1201.4 632 100.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 0.0e+00 1142.5 632 95.9
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.2e-309 1065.8 632 91.1
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.4e-228 795.8 618 70.2
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 3.1e-228 795.4 614 70.4
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 3.1e-228 795.4 645 69.0
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.9e-225 786.2 607 70.7
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 5.5e-225 784.6 615 69.3
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.4e-215 753.4 640 65.8
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 3.1e-212 742.3 621 67.5
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.1e-208 729.6 633 64.1
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.5e-201 706.8 631 63.2
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 9.5e-201 704.1 647 62.3
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.6e-195 686.8 634 62.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 6.2e-192 674.9 630 60.2
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 3.2e-188 662.5 641 58.5
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.6e-187 658.7 635 58.4
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.8e-187 657.9 641 57.7
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.5e-185 653.7 628 60.0
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 9.5e-185 651.0 647 57.8
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.8e-183 646.7 639 57.3
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.6e-182 642.9 636 57.7
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 2.6e-182 642.9 639 57.1
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 9.9e-182 641.0 645 56.7
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-181 640.6 647 56.0
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.3e-181 640.6 643 58.2
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-181 639.4 639 57.1
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 2.4e-180 636.3 599 58.6
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.1e-180 635.6 637 56.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.0e-179 631.7 636 56.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 1.1e-177 627.5 652 55.8
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.1e-177 627.5 640 56.1
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.8e-176 622.9 646 55.7
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.1e-175 620.9 648 54.9
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-175 620.5 648 55.1
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.8e-175 620.2 638 54.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 4.0e-175 619.0 620 57.3
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 5.2e-175 618.6 626 55.4
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.5e-174 617.1 639 55.9
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 2.0e-174 616.7 664 55.0
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 7.6e-174 614.8 634 56.5
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 7.6e-174 614.8 628 54.8
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 7.6e-174 614.8 634 55.0
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 9.9e-174 614.4 690 52.5
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 9.9e-174 614.4 610 56.4
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.7e-173 613.6 628 56.7
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.4e-172 609.8 633 56.1
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 3.9e-170 602.4 645 54.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 4.3e-169 599.0 632 55.9
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 5.3e-167 592.0 627 55.0
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.5e-166 590.5 636 54.6
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 2.0e-166 590.1 615 55.3
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 5.8e-166 588.6 603 55.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.7e-165 587.0 614 53.9
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.4e-164 583.2 615 53.7
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 4.2e-164 582.4 632 54.1
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.7e-163 579.7 635 53.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 3.9e-162 575.9 652 53.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 6.7e-162 575.1 607 54.4
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.1e-161 574.3 619 53.6
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.5e-161 573.9 508 61.6
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.1e-160 570.1 665 50.8
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 6.2e-160 568.5 604 53.6
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 8.1e-160 568.2 604 52.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.8e-159 567.0 606 53.8
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 6.9e-159 565.1 637 52.6
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.2e-158 564.3 600 53.5
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.5e-158 563.9 618 53.4
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.9e-157 559.7 641 53.0
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.9e-157 559.7 642 52.2
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.8e-157 559.3 608 52.6
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 6.4e-157 558.5 630 52.1
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 6.4e-157 558.5 630 52.1
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 5.5e-156 555.4 638 50.6
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 2.1e-155 553.5 601 53.4
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 2.1e-155 553.5 621 51.4
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.5e-155 552.7 609 52.2
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.6e-155 552.4 610 52.0
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.3e-154 550.1 603 52.9
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.9e-154 549.3 622 51.3
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.5e-153 546.6 599 52.8
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 5.6e-153 545.4 609 51.2
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 4.8e-152 542.3 636 51.7
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 6.2e-152 542.0 637 50.7
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.1e-151 541.2 604 53.1
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.8e-151 540.4 617 53.2
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.4e-151 540.0 594 53.2
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.4e-151 540.0 603 52.2
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 6.9e-151 538.5 628 51.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.0e-151 538.1 617 53.3
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.6e-150 536.6 638 50.5
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.2e-147 527.7 646 50.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 7.6e-142 508.4 613 50.2
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.9e-141 506.5 602 50.3
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 6.5e-141 505.4 577 53.4
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.2e-140 502.7 636 49.5
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 7.2e-140 501.9 648 48.8
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 3.6e-139 499.6 631 48.7
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 6.1e-139 498.8 515 56.3
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 7.4e-137 491.9 644 47.5
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.1e-135 488.0 627 46.6
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.2e-133 480.3 605 49.8
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-132 476.5 597 49.4
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.2e-131 474.6 634 47.9
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.8e-130 470.7 483 54.7
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 6.7e-130 468.8 571 50.1
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.8e-128 463.4 476 56.3
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 5.9e-126 455.7 595 47.7
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 8.0e-123 445.3 635 46.8
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.1e-108 398.3 616 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.7e-99 366.3 632 38.6
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 6.8e-98 362.5 629 40.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 9.8e-97 358.6 620 41.8
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.7e-94 350.5 508 45.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.5e-89 334.7 390 50.5
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 6.6e-77 292.7 382 48.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 2.8e-75 287.3 552 38.0
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 1.4e-74 285.0 277 57.0
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 4.1e-71 273.5 356 48.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 6.2e-67 259.6 238 61.3
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 6.2e-59 233.0 364 42.6
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.8e-56 223.8 295 47.1
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.5e-52 211.1 375 40.3
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.0e-49 201.4 119 81.5
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.4e-49 200.7 210 54.3
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.5e-49 200.3 249 47.0
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.9e-47 194.9 314 39.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 9.3e-47 192.6 542 30.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.9e-45 187.2 209 52.6
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 3.5e-38 164.1 182 48.4
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 2.3e-37 161.4 207 42.0
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.9e-37 160.6 148 58.8
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 9.6e-36 156.0 100 76.0
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.9e-32 143.7 169 46.7
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 4.9e-32 143.7 158 51.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-30 137.5 127 61.4
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.5e-30 137.5 216 43.1
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 7.9e-30 136.3 519 27.0
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.1e-28 132.5 269 33.8
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 4.5e-25 120.6 87 71.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.0e-24 119.4 87 71.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 2.9e-24 117.9 65 84.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 9.4e-23 112.8 112 60.7
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 9.4e-23 112.8 136 49.3
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 9.4e-23 112.8 153 47.1
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 6.1e-22 110.2 106 51.9
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 1.8e-21 108.6 108 58.3
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 8.8e-21 106.3 172 39.5
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 3.3e-20 104.4 74 73.0
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.4e-20 103.2 70 71.4
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 9.7e-20 102.8 173 43.4
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 3.1e-18 97.8 69 72.5
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.7e-17 93.2 89 55.1
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.0e-16 92.8 83 59.0
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-15 88.2 175 40.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.1e-14 85.1 179 31.8
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 2.6e-12 78.2 78 55.1
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 4.4e-12 77.4 91 48.4
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.7e-12 77.0 77 58.4
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 1.7e-11 75.5 76 53.9
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.7e-11 75.5 48 77.1
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.1e-10 72.8 49 69.4
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 4.1e-10 70.9 48 70.8
TPR.G21918 Trifolium pratense HOM05D004142 ORTHO05D410701 7.7e-09 66.6 62 66.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 2.1e-06 58.5 54 53.7


User provided reference genes

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