Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52CC3C Arachis hypogaea HOM05D002352 ORTHO05D014906 1.9e-80 302.4 145 100.0
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.3e-41 173.3 107 84.1
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.3e-41 173.3 107 84.1
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 3.6e-39 165.2 106 79.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.8e-38 162.9 107 77.6
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.4e-38 162.5 107 76.6
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.1e-38 162.2 107 76.6
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 4.0e-38 161.8 107 76.6
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 5.3e-38 161.4 107 75.7
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 5.3e-38 161.4 106 77.4
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.5e-37 159.8 107 75.7
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.5e-37 159.8 107 76.6
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.0e-37 159.5 107 74.8
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.0e-37 159.5 106 75.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.0e-37 159.5 107 75.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.6e-37 159.1 107 74.8
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.6e-37 159.1 107 75.7
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 3.4e-37 158.7 107 75.7
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 5.8e-37 157.9 107 74.8
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 5.8e-37 157.9 107 72.9
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 5.8e-37 157.9 107 74.8
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 5.8e-37 157.9 107 74.8
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 5.8e-37 157.9 107 73.8
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 5.8e-37 157.9 107 73.8
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 7.6e-37 157.5 107 72.9
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.6e-37 157.5 107 72.9
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.6e-37 157.5 107 72.9
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 7.6e-37 157.5 107 72.9
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 7.6e-37 157.5 113 70.8
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 9.9e-37 157.1 107 72.9
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 9.9e-37 157.1 107 72.0
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.3e-36 156.8 107 72.9
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.3e-36 156.8 107 72.0
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 73.8
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 73.8
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 73.8
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 73.8
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 72.9
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 72.0
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.2e-36 156.0 107 72.0
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 2.9e-36 155.6 107 72.0
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 2.9e-36 155.6 107 72.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.9e-36 155.6 107 73.8
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 2.9e-36 155.6 113 69.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.9e-36 155.6 107 71.0
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.9e-36 155.6 107 73.8
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 3.8e-36 155.2 107 72.0
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 3.8e-36 155.2 107 72.9
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 3.8e-36 155.2 107 73.8
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 3.8e-36 155.2 107 72.9
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 4.9e-36 154.8 107 72.9
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 4.9e-36 154.8 107 72.0
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.9e-36 154.8 107 71.0
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.9e-36 154.8 107 71.0
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 6.4e-36 154.5 107 72.0
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 6.4e-36 154.5 107 71.0
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.4e-36 154.5 107 71.0
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 6.4e-36 154.5 107 70.1
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 8.4e-36 154.1 113 68.1
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.4e-35 153.3 107 71.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.4e-35 153.3 107 71.0
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.4e-35 153.3 107 71.0
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 72.0
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 70.1
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 70.1
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 75.7
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 71.0
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 71.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.9e-35 152.9 107 70.1
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.4e-35 152.5 107 71.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 2.4e-35 152.5 107 72.0
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.4e-35 152.5 107 72.0
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 2.4e-35 152.5 107 72.9
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 2.4e-35 152.5 107 72.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 3.2e-35 152.1 107 72.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 3.2e-35 152.1 107 71.0
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 3.2e-35 152.1 107 71.0
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 3.2e-35 152.1 107 71.0
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.2e-35 151.8 107 70.1
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 5.4e-35 151.4 107 69.2
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 5.4e-35 151.4 107 69.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 5.4e-35 151.4 107 71.0
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.1e-35 151.0 107 69.2
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 7.1e-35 151.0 107 70.1
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.3e-35 150.6 107 68.2
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 9.3e-35 150.6 107 68.2
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 9.3e-35 150.6 107 68.2
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 9.3e-35 150.6 107 68.2
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 9.3e-35 150.6 107 70.1
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.2e-34 150.2 107 71.0
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.2e-34 150.2 107 70.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.6e-34 149.8 107 68.2
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.1e-34 149.4 107 69.2
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.1e-34 149.4 107 68.2
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 2.7e-34 149.1 107 68.2
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.7e-34 149.1 107 69.2
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 3.5e-34 148.7 107 70.1
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 3.5e-34 148.7 107 70.1
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 3.5e-34 148.7 107 70.1
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 3.5e-34 148.7 107 70.1
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 3.5e-34 148.7 107 69.2
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 4.6e-34 148.3 107 67.3
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 6.0e-34 147.9 107 70.1
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 6.0e-34 147.9 107 67.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 7.9e-34 147.5 107 66.4
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 7.9e-34 147.5 107 67.3
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 7.9e-34 147.5 117 65.0
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 7.9e-34 147.5 107 66.4
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.0e-33 147.1 107 69.2
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.3e-33 146.7 116 64.7
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.8e-33 146.4 107 67.3
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.3e-33 146.0 107 67.3
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 2.3e-33 146.0 107 66.4
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.3e-33 146.0 107 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 3.9e-33 145.2 107 67.3
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 3.9e-33 145.2 107 66.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 8.7e-33 144.1 107 67.3
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.1e-32 143.7 107 65.4
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.1e-32 143.7 116 62.9
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.3e-32 142.1 107 65.4
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.3e-32 142.1 107 66.4
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 1.3e-31 140.2 133 57.1
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.1e-31 139.4 108 63.9
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 2.8e-31 139.0 103 70.9
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.4e-29 132.1 105 61.9
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.3e-28 130.2 107 59.8
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.6e-26 123.2 107 56.1
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 3.5e-26 122.1 107 51.4
TPR.G28591 Trifolium pratense HOM05D002352 ORTHO05D014906 2.1e-23 112.8 104 62.5
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 1.4e-22 110.2 106 50.0
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 2.4e-22 109.4 106 57.5
arahy.Tifrunner.gnm1.ann1.TCII1L Arachis hypogaea HOM05D002352 ORTHO05D000332 3.1e-22 109.0 83 69.9
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.1e-22 109.0 107 54.2
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 4.0e-22 108.6 80 67.5
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 3.8e-20 102.1 86 62.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 6.5e-20 101.3 62 77.4
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 1.1e-19 100.5 80 65.0
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 7.1e-19 97.8 77 64.9
arahy.Tifrunner.gnm1.ann1.KL0F8I Arachis hypogaea HOM05D002352 ORTHO05D014906 6.0e-18 94.7 71 73.2
TPR.G13263 Trifolium pratense HOM05D002352 ORTHO05D014906 2.8e-15 85.9 103 48.5
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 3.1e-14 82.4 80 52.5
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 5.9e-13 78.2 107 43.9
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 8.5e-12 74.3 104 38.5
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 1.6e-10 70.1 106 34.9
arahy.Tifrunner.gnm1.ann1.14M6HG Arachis hypogaea HOM05D002352 ORTHO05D000032 6.7e-09 64.7 44 72.7
Carub.0002s1370 Capsella rubella HOM05D002352 ORTHO05D014906 4.3e-08 62.0 99 46.5
MD07G1271500 Malus domestica HOM05D002352 ORTHO05D014906 1.4e-06 57.0 33 75.8


User provided reference genes

Program Settings