Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 8.9e-99 363.6 184 100.0
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 8.9e-99 363.6 184 100.0
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.2e-97 359.0 184 98.4
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 4.9e-97 357.8 184 98.4
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.4e-90 335.1 201 87.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 3.4e-90 335.1 201 87.1
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.4e-83 313.2 197 82.2
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 1.4e-80 303.1 197 79.2
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 5.4e-80 301.2 197 79.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 7.1e-80 300.8 197 78.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 6.0e-79 297.7 197 78.2
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 5.1e-78 294.7 197 77.2
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 2.5e-77 292.4 197 76.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.6e-77 291.2 197 74.6
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 5.6e-77 291.2 197 75.6
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 7.3e-77 290.8 197 74.6
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.2e-76 290.0 197 77.2
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.2e-76 290.0 197 76.1
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.2e-76 290.0 197 76.1
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 2.1e-76 289.3 197 76.6
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 6.2e-76 287.7 197 74.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 8.1e-76 287.3 197 75.1
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.1e-75 287.0 197 73.1
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.8e-75 286.2 197 74.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 3.1e-75 285.4 197 74.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 4.0e-75 285.0 197 74.1
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.2e-75 284.6 197 74.6
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 5.2e-75 284.6 198 75.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.9e-75 283.9 197 74.1
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.2e-74 283.5 197 74.1
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.5e-74 283.1 193 74.1
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 2.6e-74 282.3 198 75.3
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 2.6e-74 282.3 197 73.6
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.4e-74 282.0 197 72.1
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.4e-74 282.0 197 74.1
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.4e-74 282.0 197 74.1
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 4.4e-74 281.6 197 71.1
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 5.8e-74 281.2 197 74.1
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 5.8e-74 281.2 197 72.1
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 7.6e-74 280.8 197 73.6
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 7.6e-74 280.8 197 74.1
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.7e-73 279.6 194 73.7
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 2.2e-73 279.3 197 73.6
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 2.2e-73 279.3 197 72.6
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 3.7e-73 278.5 197 71.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 8.3e-73 277.3 197 72.6
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.4e-72 276.6 197 72.6
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.9e-72 276.2 197 72.1
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 2.4e-72 275.8 197 71.1
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 2.4e-72 275.8 197 71.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 3.2e-72 275.4 197 70.6
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 7.1e-72 274.2 197 72.1
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.6e-71 273.1 196 69.4
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.6e-71 273.1 197 72.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 2.7e-71 272.3 197 69.5
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 3.5e-71 271.9 197 69.5
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 3.5e-71 271.9 197 71.1
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 4.6e-71 271.6 197 71.6
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 4.6e-71 271.6 197 70.1
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 4.6e-71 271.6 196 68.4
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 6.0e-71 271.2 197 69.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 6.0e-71 271.2 197 69.0
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 6.0e-71 271.2 197 71.1
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.0e-71 271.2 211 67.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.0e-71 271.2 211 67.8
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 7.8e-71 270.8 212 67.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 5.1e-70 268.1 197 69.0
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 5.1e-70 268.1 198 72.2
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.5e-69 266.5 237 60.8
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 3.3e-69 265.4 197 68.5
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 4.3e-69 265.0 189 72.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 4.3e-69 265.0 189 72.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 5.6e-69 264.6 189 72.5
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 5.6e-69 264.6 189 72.5
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 5.6e-69 264.6 189 72.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 5.6e-69 264.6 189 72.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 7.3e-69 264.2 197 71.6
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.6e-68 263.1 197 66.0
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.6e-68 263.1 189 72.0
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-68 262.7 189 72.0
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 2.1e-68 262.7 189 72.0
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 2.8e-68 262.3 198 69.7
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 3.6e-68 261.9 189 71.4
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 3.6e-68 261.9 189 71.4
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 4.7e-68 261.5 187 70.6
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.2e-68 261.2 197 68.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.2e-68 261.2 198 69.2
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 8.1e-68 260.8 189 72.0
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.1e-67 260.4 205 66.3
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.4e-67 260.0 189 72.0
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.4e-67 259.2 196 64.3
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.1e-67 258.8 189 70.4
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 8.9e-67 257.3 197 69.0
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.0e-66 256.1 198 69.2
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 7.6e-66 254.2 185 73.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 9.9e-66 253.8 193 67.4
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.2e-65 252.7 197 67.5
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.8e-65 251.9 198 66.7
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 4.9e-65 251.5 198 66.7
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 8.4e-65 250.8 198 67.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 8.4e-65 250.8 195 66.7
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.1e-64 250.4 198 66.2
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 6.0e-63 244.6 198 65.2
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 6.0e-63 244.6 196 66.3
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 7.8e-63 244.2 292 50.7
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.1e-62 241.5 187 67.4
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 3.3e-61 238.8 198 60.6
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.2e-57 226.1 180 67.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 6.4e-57 224.6 186 66.1
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.3e-53 211.1 198 55.1
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 2.1e-52 209.5 194 57.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 4.5e-50 201.8 194 55.2
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 5.8e-50 201.4 223 48.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 6.0e-47 191.4 159 67.3
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 7.9e-47 191.0 158 65.8
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.0e-46 190.7 158 67.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 1.3e-44 183.7 197 53.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.6e-44 183.3 198 51.0
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 8.1e-44 181.0 223 47.5
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.1e-44 181.0 197 49.2
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.1e-44 181.0 197 49.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 8.1e-44 181.0 198 49.5
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-43 180.6 197 49.2
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.4e-43 180.3 168 57.7
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.2e-40 168.7 176 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.7e-39 166.0 195 49.2
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.8e-38 163.3 175 50.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-37 160.6 143 60.8
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.8e-35 153.3 117 63.2
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.5e-34 148.7 77 81.8
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.5e-34 148.7 77 81.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 5.0e-33 145.2 100 75.0
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.4e-33 144.4 77 83.1
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.2e-32 142.5 75 100.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 5.3e-27 125.2 102 69.6
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-22 110.9 80 65.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.0e-22 110.9 68 76.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.2e-18 97.4 136 42.6
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.6e-15 87.0 59 76.3
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.6e-15 87.0 52 76.9
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.9e-14 82.4 52 75.0
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.0e-13 80.1 53 77.4
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.0e-13 80.1 62 75.8
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 9.7e-13 77.8 234 28.2
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.3e-12 75.1 49 79.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-08 63.2 74 45.9
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.2e-08 62.4 48 70.8
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.6e-07 60.5 49 69.4
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.8e-06 57.0 65 55.4
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 2.3e-06 56.6 48 66.7


User provided reference genes

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