Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.511LEY Arachis hypogaea HOM05D040116 ORTHO05D085297 3.1e-117 425.2 228 100.0
arahy.Tifrunner.gnm1.ann1.M7PE33 Arachis hypogaea HOM05D040116 ORTHO05D009646 1.9e-66 256.5 134 93.3
arahy.Tifrunner.gnm1.ann1.FDP8U9 Arachis hypogaea HOM05D040116 ORTHO05D009646 2.3e-56 223.0 218 58.3
arahy.Tifrunner.gnm1.ann1.4YM5KJ Arachis hypogaea HOM05D000230 ORTHO05D000176 7.5e-15 85.1 41 90.2
arahy.Tifrunner.gnm1.ann1.JS5KS9 Arachis hypogaea HOM05D000230 ORTHO05D000176 1.3e-14 84.3 57 70.2
arahy.Tifrunner.gnm1.ann1.V659E7 Arachis hypogaea HOM05D000230 ORTHO05D000176 1.3e-14 84.3 57 70.2
Medtr8g093630 Medicago truncatula HOM05D000230 ORTHO05D000176 1.4e-13 80.9 40 87.5
Glyma.05G191600 Glycine max HOM05D000230 ORTHO05D000176 5.4e-13 79.0 40 82.5
Glyma.08G156800 Glycine max HOM05D000230 ORTHO05D000176 5.4e-13 79.0 40 82.5
arahy.Tifrunner.gnm1.ann1.A47W8V Arachis hypogaea HOM05D000619 ORTHO05D012567 7.1e-13 78.6 81 56.8
Ca_17639_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 9.2e-13 78.2 40 82.5
TPR.G8157 Trifolium pratense HOM05D000230 ORTHO05D000176 1.6e-12 77.4 40 82.5
arahy.Tifrunner.gnm1.ann1.B771QR Arachis hypogaea HOM05D000230 ORTHO05D000176 2.1e-12 77.0 57 59.6
arahy.Tifrunner.gnm1.ann1.YYM7FJ Arachis hypogaea HOM05D000230 ORTHO05D000176 2.1e-12 77.0 57 59.6
Glyma.04G213100 Glycine max HOM05D000230 ORTHO05D000176 2.7e-12 76.6 40 80.0
Psat5g062520 Pisum sativum HOM05D000230 ORTHO05D000176 2.7e-12 76.6 40 80.0
Ca_16943_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 4.6e-12 75.9 40 80.0
Ca_16962_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 4.6e-12 75.9 40 80.0
Lalb_Chr23g0272591 Lupinus albus HOM05D000230 ORTHO05D000176 6.0e-12 75.5 40 77.5
Manes.12G155300 Manihot esculenta HOM05D000230 ORTHO05D000176 6.0e-12 75.5 40 75.0
Lj1g0014162 Lotus japonicus HOM05D000230 ORTHO05D000176 7.8e-12 75.1 40 77.5
FAN28G0249 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.0e-11 74.7 41 73.2
Oeu037822.1 Olea europaea HOM05D000230 ORTHO05D000176 1.0e-11 74.7 47 61.7
Psat7g046280 Pisum sativum HOM05D000230 ORTHO05D000176 1.0e-11 74.7 57 59.6
MBI15_g43502_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 1.3e-11 74.3 40 75.0
ClCG02G000530 Citrullus lanatus HOM05D000230 ORTHO05D000176 2.3e-11 73.6 40 72.5
VMungo1309G2269 Vigna mungo HOM05D000230 ORTHO05D000176 3.0e-11 73.2 40 75.0
CSS0021510 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 3.9e-11 72.8 40 70.0
Medtr3g096200 Medicago truncatula HOM05D000230 ORTHO05D000176 3.9e-11 72.8 40 77.5
Sabra05G0050100 Salix brachista HOM05D000230 ORTHO05D000176 3.9e-11 72.8 50 62.0
Ciclev10000018m.g Citrus clementina HOM05D000230 ORTHO05D000176 5.1e-11 72.4 40 70.0
CsaV3_2G018300 Cucumis sativus L. HOM05D000230 ORTHO05D000176 5.1e-11 72.4 40 70.0
ATR0184G033 Amborella trichopoda HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 70.0
FvH4_1g24300 Fragaria vesca HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 70.0
FAN23G0965 Fragaria x ananassa HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 70.0
FAN23G2391 Fragaria x ananassa HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 70.0
FAN26G0885 Fragaria x ananassa HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 70.0
PSO541G0109 Papaver somniferum HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 72.5
PSO675G2931 Papaver somniferum HOM05D000230 ORTHO05D000176 6.6e-11 72.0 40 72.5
CAN.G652.13 Capsicum annuum HOM05D000230 ORTHO05D000176 8.6e-11 71.6 40 75.0
TPR.G37378 Trifolium pratense HOM05D000230 ORTHO05D000176 1.1e-10 71.2 57 57.9
MELO3C023241.2 Cucumis melo HOM05D000230 ORTHO05D000176 1.5e-10 70.9 40 67.5
MELO3C023251.2 Cucumis melo HOM05D000230 ORTHO05D000176 1.5e-10 70.9 40 67.5
CsaV3_2G018230 Cucumis sativus L. HOM05D000230 ORTHO05D000176 1.5e-10 70.9 40 67.5
TAR628G0760 Trochodendron aralioides HOM05D000230 ORTHO05D000176 1.5e-10 70.9 40 67.5
CANSAT01G0637 Cannabis sativa HOM05D000230 ORTHO05D000176 1.9e-10 70.5 40 67.5
CiPaw.03G122400 Carya illinoinensis HOM05D000230 ORTHO05D000176 1.9e-10 70.5 40 67.5
QL06p028617 Quercus lobata HOM05D000230 ORTHO05D000176 1.9e-10 70.5 40 67.5
Dinv24353 Davidia involucrata HOM05D000230 ORTHO05D000176 2.5e-10 70.1 40 67.5
Oeu050136.1 Olea europaea HOM05D000230 ORTHO05D000176 2.5e-10 70.1 40 67.5
RcHm_v2.0_Chr2g0120781 Rosa chinensis HOM05D000230 ORTHO05D000176 2.5e-10 70.1 40 67.5
Solyc11g005980.3 Solanum lycopersicum HOM05D000230 ORTHO05D000176 2.5e-10 70.1 40 72.5
Sopen11g001920 Solanum pennellii HOM05D000230 ORTHO05D000176 2.5e-10 70.1 40 72.5
TAR381G0447 Trochodendron aralioides HOM05D000230 ORTHO05D000176 2.5e-10 70.1 40 67.5
Duzib187G0485 Durio zibethinus HOM05D000230 ORTHO05D000176 3.3e-10 69.7 40 67.5
Cfa002887 Carpinus fangiana HOM05D000230 ORTHO05D000176 4.3e-10 69.3 40 65.0
Haze_25227 Corylus avellana HOM05D000230 ORTHO05D000176 4.3e-10 69.3 40 67.5
Lalb_Chr11g0068401 Lupinus albus HOM05D000230 ORTHO05D000176 4.3e-10 69.3 40 77.5
Nitab4.5_0000856g0120 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.3e-10 69.3 48 62.5
Nitab4.5_0010049g0010 Nicotiana tabacum HOM05D000230 ORTHO05D000176 4.3e-10 69.3 48 62.5
Oeu004247.1 Olea europaea HOM05D000230 ORTHO05D000176 4.3e-10 69.3 40 67.5
Potri.005G058300 Populus trichocarpa HOM05D000230 ORTHO05D000176 4.3e-10 69.3 40 65.0
GSVIVG01026489001 Vitis vinifera HOM05D000230 ORTHO05D000176 5.6e-10 68.9 40 65.0
Atru.chr4.1976 Acer truncatum HOM05D000230 ORTHO05D000176 7.3e-10 68.6 40 67.5
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 7.3e-10 68.6 37 86.5
EL10Ac6g15312 Beta vulgaris HOM05D000230 ORTHO05D000176 7.3e-10 68.6 48 58.3
Aqoxy2G01644 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 9.5e-10 68.2 59 55.9
Thecc.01G131200 Theobroma cacao HOM05D000230 ORTHO05D000176 9.5e-10 68.2 40 65.0
Aqoxy7G03480 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 1.2e-09 67.8 55 54.5
SalBow1G4131 Salvia bowleyana HOM05D000230 ORTHO05D000176 1.2e-09 67.8 40 70.0
SHI11473 Sapria himalayana HOM05D000230 ORTHO05D000176 1.2e-09 67.8 40 65.0
THA.LOC104807157 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 1.2e-09 67.8 40 62.5
VMungo0251G2149 Vigna mungo HOM05D000230 ORTHO05D000176 1.2e-09 67.8 40 75.0
Actinidia06625 Actinidia chinensis HOM05D000230 ORTHO05D000176 1.6e-09 67.4 40 67.5
Lj4g0022892 Lotus japonicus HOM05D000230 ORTHO05D000176 2.1e-09 67.0 40 72.5
Peaxi162Scf00183g00421 Petunia axillaris HOM05D000230 ORTHO05D000176 2.1e-09 67.0 40 67.5
PGR119G1551 Punica granatum HOM05D000230 ORTHO05D000176 2.1e-09 67.0 40 67.5
TWI79G1186 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 3.6e-09 66.2 38 68.4
vmacro18666 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 3.6e-09 66.2 40 67.5
arahy.Tifrunner.gnm1.ann1.SX799G Arachis hypogaea HOM05D000660 ORTHO05D000766 4.7e-09 65.9 37 83.8
Carub.0003s2817 Capsella rubella HOM05D000230 ORTHO05D000176 4.7e-09 65.9 40 67.5
Gohir.A10G156100 Gossypium hirsutum HOM05D000230 ORTHO05D000176 4.7e-09 65.9 40 67.5
Gorai.011G120300 Gossypium raimondii HOM05D000230 ORTHO05D000176 4.7e-09 65.9 40 67.5
Lj4C844G3 Lonicera japonica HOM05D000230 ORTHO05D000176 4.7e-09 65.9 40 65.0
AL3G45540 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 6.2e-09 65.5 40 65.0
AT2G13680 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 6.2e-09 65.5 40 65.0
CARHR104750 Cardamine hirsuta HOM05D000230 ORTHO05D000176 6.2e-09 65.5 40 65.0
MD02G1211500 Malus domestica HOM05D000230 ORTHO05D000176 6.2e-09 65.5 40 67.5
Prupe.4G271000 Prunus persica HOM05D000230 ORTHO05D000176 6.2e-09 65.5 40 67.5
Ah.02g121440 Amaranthus hybridus HOM05D000230 ORTHO05D000176 8.1e-09 65.1 40 62.5
HPP92_010433 Vanilla planifolia HOM05D000230 ORTHO05D000176 8.1e-09 65.1 40 67.5
Cc07_g18440 Coffea canephora HOM05D000230 ORTHO05D000176 1.1e-08 64.7 40 65.0
HanXRQChr09g0258671 Helianthus annuus HOM05D000230 ORTHO05D000176 1.1e-08 64.7 57 52.6
Hund12766 Selenicereus undatus HOM05D000230 ORTHO05D000176 1.1e-08 64.7 40 62.5
SGA_v2.0_scaffold289G47260 Striga asiatica HOM05D000230 ORTHO05D000176 1.1e-08 64.7 40 65.0
HPP92_017512 Vanilla planifolia HOM05D000230 ORTHO05D000176 1.1e-08 64.7 40 70.0
Migut.H00724 Erythranthe guttata HOM05D000230 ORTHO05D000176 1.4e-08 64.3 40 65.0
SGA_v2.0_scaffold370G50126 Striga asiatica HOM05D000230 ORTHO05D000176 1.4e-08 64.3 40 65.0
AUR62003558 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.8e-08 63.9 40 62.5
Hund04407 Selenicereus undatus HOM05D000230 ORTHO05D000176 1.8e-08 63.9 40 60.0
Cpa.g.sc42.151 Carica papaya HOM05D000230 ORTHO05D000176 2.3e-08 63.5 40 65.0
COL.COLO4_35732 Corchorus olitorius HOM05D000230 ORTHO05D000176 2.3e-08 63.5 40 62.5
Sed0007581 Sechium edule HOM05D000230 ORTHO05D000176 2.3e-08 63.5 40 62.5
Hma1.2p1_0476F.1_g160885 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 3.1e-08 63.2 39 64.1
BcaB02g11528 Brassica carinata HOM05D000230 ORTHO05D000176 4.0e-08 62.8 40 60.0
A09p10430 Brassica napus HOM05D000230 ORTHO05D000176 4.0e-08 62.8 40 60.0
C09p12370 Brassica napus HOM05D000230 ORTHO05D000176 4.0e-08 62.8 40 60.0
BraA09t36689Z Brassica rapa HOM05D000230 ORTHO05D000176 4.0e-08 62.8 40 60.0
Os06g0182300 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 4.0e-08 62.8 40 65.0
AUR62017872 Chenopodium quinoa HOM05D000230 ORTHO05D000176 5.2e-08 62.4 40 60.0
Sc03g0006030 Simmondsia chinensis HOM05D000230 ORTHO05D000176 5.2e-08 62.4 40 60.0
Migut.L00886 Erythranthe guttata HOM05D000230 ORTHO05D000176 6.8e-08 62.0 40 67.5
Lalb_Chr07g0184431 Lupinus albus HOM05D000230 ORTHO05D000176 6.8e-08 62.0 40 70.0
HPP92_010395 Vanilla planifolia HOM05D000230 ORTHO05D000176 6.8e-08 62.0 83 39.8
Eucgr.I00208 Eucalyptus grandis HOM05D000230 ORTHO05D000176 8.9e-08 61.6 40 62.5
SGA_v2.0_scaffold41G15755 Striga asiatica HOM05D000230 ORTHO05D000176 8.9e-08 61.6 40 65.0
Gohir.D10G109300 Gossypium hirsutum HOM05D000230 ORTHO05D000176 1.2e-07 61.2 40 62.5
Gorai.011G119900 Gossypium raimondii HOM05D000230 ORTHO05D000176 1.2e-07 61.2 40 62.5
Thhalv10022518m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.5e-07 60.8 40 57.5
PSO339G5013 Papaver somniferum HOM05D000230 ORTHO05D000176 1.5e-07 60.8 59 50.8
PSO384G4929 Papaver somniferum HOM05D000230 ORTHO05D000176 2.6e-07 60.1 40 62.5
BcaC04g23077 Brassica carinata HOM05D000230 ORTHO05D000176 3.4e-07 59.7 40 57.5
BolC9t54131H Brassica oleracea HOM05D000230 ORTHO05D000176 3.4e-07 59.7 40 57.5
Gohir.A10G156400 Gossypium hirsutum HOM05D000230 ORTHO05D000176 4.4e-07 59.3 40 60.0
vmacro12807 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 4.4e-07 59.3 116 33.6
Sp3g27070 Schrenkiella parvula HOM05D000230 ORTHO05D000176 5.8e-07 58.9 40 52.5
Aa31LG8G12320 Aethionema arabicum HOM05D000230 ORTHO05D000176 7.6e-07 58.5 43 55.8
ECA234G3310 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.3e-06 57.8 57 45.6
PSO135G0764 Papaver somniferum HOM05D000230 ORTHO05D000176 1.3e-06 57.8 59 50.8
Rhsim10G0135300 Rhododendron simsii HOM05D000230 ORTHO05D000176 2.9e-06 56.6 57 47.4


User provided reference genes

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