Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-155 552.7 273 100.0
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 6.4e-154 547.4 273 98.9
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-153 546.6 273 98.5
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 9.3e-153 543.5 273 98.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 4.9e-146 521.2 273 95.2
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 5.1e-143 511.1 269 91.8
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.4e-140 502.3 269 90.0
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 7.6e-139 497.3 269 89.2
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.3e-138 496.5 269 89.2
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.9e-137 492.7 281 85.4
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.2e-137 491.9 268 87.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 4.2e-137 491.5 269 87.4
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.2e-136 490.0 269 87.4
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 3.5e-136 488.4 244 98.8
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 3.9e-135 485.0 269 87.4
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 5.1e-135 484.6 269 86.2
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 5.1e-135 484.6 271 87.1
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 6.7e-135 484.2 271 86.3
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 6.7e-135 484.2 267 86.5
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.1e-134 483.4 269 85.9
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.1e-134 483.4 269 85.9
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.9e-134 482.6 269 85.9
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.9e-134 482.6 269 85.5
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 2.5e-134 482.3 269 85.9
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 5.6e-134 481.1 269 85.9
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 9.6e-134 480.3 274 86.5
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-133 479.6 269 84.8
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.1e-133 479.2 270 85.2
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 8.2e-133 477.2 269 84.8
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.8e-132 476.1 271 83.8
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 1.8e-132 476.1 268 85.1
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 3.1e-132 475.3 269 84.8
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 3.1e-132 475.3 269 84.4
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 83.6
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 84.0
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 5.3e-132 474.6 270 82.6
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 6.9e-132 474.2 270 85.2
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 6.9e-132 474.2 268 84.3
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 9.0e-132 473.8 269 84.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 9.0e-132 473.8 269 84.8
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.2e-131 473.4 269 84.4
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 84.0
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 83.6
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 2.6e-131 472.2 269 82.9
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 2.6e-131 472.2 269 82.9
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 3.4e-131 471.9 269 83.6
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 4.5e-131 471.5 269 83.3
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 4.5e-131 471.5 269 82.5
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.0e-130 470.3 266 83.8
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.0e-130 470.3 270 84.1
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.0e-130 470.3 263 84.8
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.0e-130 470.3 269 83.3
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.7e-130 469.5 270 83.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.2e-130 469.2 269 82.2
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 2.2e-130 469.2 269 82.5
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 81.4
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 2.9e-130 468.8 267 83.5
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 82.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 3.8e-130 468.4 307 77.2
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 8.4e-130 467.2 269 82.2
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.4e-130 467.2 269 81.8
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 83.6
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.1e-129 466.8 270 82.2
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-129 466.5 269 82.2
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 81.8
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 81.8
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.5e-129 465.7 269 84.8
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 81.4
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 4.2e-129 464.9 269 81.4
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 5.5e-129 464.5 268 83.6
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 7.1e-129 464.2 269 80.7
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.6e-128 463.0 269 81.8
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.1e-128 462.6 269 81.4
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-128 462.6 269 81.0
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.1e-128 462.6 269 82.2
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.1e-128 462.6 269 82.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 80.7
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.5e-128 461.8 271 80.4
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.0e-128 461.1 275 80.0
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-127 460.3 275 80.0
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-127 459.5 275 80.0
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 2.3e-127 459.1 270 81.1
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.9e-127 458.4 269 79.9
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 5.1e-127 458.0 269 79.9
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 6.7e-127 457.6 270 80.7
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.9e-126 456.1 269 82.2
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.3e-126 455.3 269 80.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 4.3e-126 454.9 270 80.4
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 5.7e-126 454.5 265 83.8
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 7.4e-126 454.1 271 80.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 2.8e-125 452.2 270 80.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.8e-125 452.2 269 79.6
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.8e-124 449.5 267 81.6
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.1e-124 448.4 272 85.7
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.1e-124 448.4 269 78.4
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.2e-123 446.8 269 77.0
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 7.7e-123 444.1 269 79.6
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 7.7e-123 444.1 269 79.9
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 3.8e-122 441.8 286 75.5
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 78.8
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 2.5e-121 439.1 252 85.3
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 7.2e-121 437.6 275 78.5
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 9.4e-121 437.2 269 78.4
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.2e-120 436.8 269 79.2
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 2.1e-120 436.0 272 78.3
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 78.8
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 6.1e-120 434.5 261 77.0
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.0e-119 433.7 269 79.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 1.0e-119 433.7 269 76.2
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.4e-119 433.3 268 74.3
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 4.3e-118 428.3 269 77.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 5.7e-118 427.9 268 73.9
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.7e-117 426.4 269 76.2
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.2e-117 426.0 269 75.8
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.3e-117 424.5 269 78.8
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.3e-117 424.5 269 76.6
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.1e-116 423.7 269 72.5
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.4e-116 422.5 266 75.2
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 9.1e-116 420.6 269 74.7
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.9e-115 417.9 269 75.1
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.2e-114 416.0 269 75.1
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 2.2e-114 416.0 237 86.1
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 9.4e-113 410.6 269 74.3
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 3.6e-112 408.7 272 71.3
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.1e-112 407.9 279 69.5
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.0e-111 407.1 269 75.8
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-111 406.8 273 71.1
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-111 406.4 274 70.4
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-111 405.2 273 70.7
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 8.8e-111 404.1 274 70.1
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-110 403.7 279 69.5
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.3e-110 402.1 274 69.7
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 5.7e-110 401.4 235 80.0
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.3e-109 400.2 271 70.5
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.7e-109 399.8 270 69.6
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-109 398.7 276 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.4e-108 396.7 270 69.3
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 5.3e-108 394.8 269 70.3
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 7.7e-107 391.0 269 68.0
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.2e-106 389.4 270 67.4
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 5.5e-105 384.8 270 67.4
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.2e-104 383.6 212 85.4
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.0e-103 380.6 271 68.3
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 2.3e-103 379.4 270 66.7
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 3.7e-101 372.1 271 66.8
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.2e-99 367.1 214 86.4
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.0e-98 361.7 249 68.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.4e-95 353.6 211 81.0
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 7.5e-94 347.8 197 84.8
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 3.1e-92 342.4 295 58.0
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.3e-90 337.0 187 84.0
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.8e-87 324.7 189 78.8
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 6.6e-82 308.1 269 56.5
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.2e-62 244.2 189 64.0
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.4e-60 237.3 143 79.7
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.5e-57 227.3 272 43.8
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-57 225.3 133 76.7
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.2e-56 224.2 128 81.2
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.6e-56 223.8 181 64.1
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-52 210.7 188 61.7
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 2.7e-51 206.5 267 41.6
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.6e-43 180.6 269 41.3
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.6e-38 163.3 278 35.6
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-37 159.8 129 65.9
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 3.2e-36 156.4 109 74.3
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 5.1e-34 149.1 88 77.3
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 7.3e-33 145.2 82 81.7
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 4.5e-30 136.0 77 81.8
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-27 126.7 67 89.6
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-23 114.0 108 54.6
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.8e-22 109.0 64 79.7
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 2.2e-21 107.1 67 67.2
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.7e-17 92.4 82 56.1
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 4.5e-14 82.8 65 61.5
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 7.6e-14 82.0 60 63.3
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 2.9e-13 80.1 49 73.5
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 2.9e-13 80.1 49 73.5
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 4.2e-12 76.3 57 64.9
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 7.1e-12 75.5 57 64.9
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 1.3e-08 64.7 50 64.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.2e-08 63.9 44 63.6


User provided reference genes

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