Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.7e-97 359.4 185 100.0
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 9.9e-82 307.0 160 99.4
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.1e-80 303.5 185 81.6
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.2e-79 300.1 185 82.2
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.5e-79 298.5 185 80.5
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.3e-78 296.6 180 81.7
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 5.6e-77 291.2 185 80.5
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 6.2e-76 287.7 183 78.1
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.4e-75 286.6 178 81.5
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 6.9e-75 284.3 177 82.5
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.5e-74 283.1 185 78.9
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.9e-73 278.9 185 76.8
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 4.9e-73 278.1 179 78.2
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 2.4e-72 275.8 181 77.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.0e-70 270.4 178 78.1
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 8.7e-70 267.3 187 73.8
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 8.7e-70 267.3 185 73.5
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.5e-69 265.8 185 75.1
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 5.6e-69 264.6 174 77.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 7.4e-69 264.2 186 73.7
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 7.4e-69 264.2 181 72.4
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 7.4e-69 264.2 185 71.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 7.4e-69 264.2 187 74.9
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.3e-68 263.5 175 75.4
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.3e-68 263.5 181 75.7
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-68 263.1 185 73.5
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.1e-68 262.7 176 76.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.8e-68 262.3 173 78.0
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.6e-68 261.9 186 73.7
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 6.2e-68 261.2 185 74.1
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.4e-67 260.0 183 71.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 3.1e-67 258.8 175 75.4
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 5.3e-67 258.1 181 72.4
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 6.9e-67 257.7 181 74.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.9e-67 257.7 181 73.5
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.2e-66 256.9 179 72.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.2e-66 256.9 178 74.2
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.2e-66 256.9 178 74.2
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.2e-66 256.9 178 74.2
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.5e-66 256.5 185 69.7
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 2.0e-66 256.1 178 74.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.6e-66 255.8 179 72.6
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 3.4e-66 255.4 166 76.5
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.4e-66 255.4 174 75.9
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 7.6e-66 254.2 187 70.6
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.9e-65 252.3 198 65.7
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.9e-65 252.3 171 74.3
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 3.8e-65 251.9 180 69.4
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 4.9e-65 251.5 183 69.4
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 8.4e-65 250.8 180 67.2
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 8.4e-65 250.8 179 70.9
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.9e-64 249.6 179 69.8
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.2e-64 248.8 178 71.3
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 5.5e-64 248.1 182 68.7
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 7.1e-64 247.7 179 70.9
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 7.1e-64 247.7 178 69.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 9.3e-64 247.3 180 68.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.6e-63 246.5 185 67.0
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.5e-63 245.4 185 67.6
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.5e-63 245.4 182 67.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 6.0e-63 244.6 169 72.8
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 6.0e-63 244.6 185 67.0
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 6.0e-63 244.6 193 65.3
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.9e-63 244.2 185 66.5
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 7.9e-63 244.2 169 71.0
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 7.9e-63 244.2 169 71.0
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-62 243.8 169 71.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-62 243.8 180 67.8
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-62 243.8 169 71.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.0e-62 243.8 180 67.8
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.3e-62 243.4 193 65.3
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.3e-62 243.4 178 70.8
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.8e-62 243.0 185 67.6
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-62 241.9 169 70.4
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.9e-62 241.9 182 67.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 3.9e-62 241.9 182 67.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 3.9e-62 241.9 174 71.3
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 5.1e-62 241.5 185 66.5
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 5.1e-62 241.5 174 71.3
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 6.7e-62 241.1 182 67.0
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 8.7e-62 240.7 173 72.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.1e-61 240.4 185 68.1
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.5e-61 240.0 169 70.4
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.9e-61 239.6 166 71.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.9e-61 239.6 174 70.7
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.5e-61 239.2 176 69.3
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.3e-61 238.8 180 66.7
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 5.6e-61 238.0 178 69.1
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 9.6e-61 237.3 164 72.6
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.3e-60 236.9 193 63.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.6e-60 236.5 160 73.8
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.6e-60 236.5 178 69.1
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.1e-60 236.1 185 65.4
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.8e-60 235.7 193 62.7
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 3.7e-60 235.3 184 63.6
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 4.8e-60 235.0 175 67.4
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 4.8e-60 235.0 193 64.8
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 8.1e-60 234.2 170 68.2
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.4e-59 233.4 173 68.8
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.4e-59 232.6 208 59.6
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 9.0e-59 230.7 182 64.8
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.0e-59 230.7 181 63.5
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.2e-58 230.3 169 68.6
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.5e-58 229.9 184 66.8
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.6e-58 229.2 178 64.0
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 2.6e-58 229.2 250 53.2
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.4e-58 228.8 171 69.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 4.5e-58 228.4 185 61.1
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 5.8e-58 228.0 187 63.6
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 7.6e-58 227.6 179 64.2
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 7.6e-58 227.6 166 63.9
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.0e-57 227.3 190 65.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-57 226.9 159 71.1
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.7e-57 226.5 161 72.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.1e-56 223.8 190 62.6
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 9.3e-56 220.7 183 62.8
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.5e-55 218.8 199 58.3
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.5e-55 218.8 186 66.1
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 6.0e-55 218.0 196 60.7
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.3e-54 216.9 169 60.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.0e-54 215.7 156 68.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.0e-54 215.7 156 68.6
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.9e-54 215.3 156 67.9
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 5.1e-54 214.9 178 63.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.5e-53 213.4 144 73.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 5.7e-53 211.5 188 60.1
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 9.6e-53 210.7 166 60.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.8e-52 209.1 130 76.2
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 8.2e-52 207.6 168 66.1
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.4e-51 206.1 130 76.2
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 9.0e-51 204.1 145 70.3
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 3.4e-50 202.2 129 79.8
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.3e-49 200.3 130 76.9
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 6.5e-49 198.0 130 74.6
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 6.5e-49 198.0 130 74.6
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 4.2e-48 195.3 133 73.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 5.5e-48 194.9 130 75.4
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.8e-46 189.9 122 76.2
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 7.4e-45 184.5 124 76.6
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.2e-44 183.0 131 71.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-43 180.6 144 65.3
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.4e-43 180.3 131 70.2
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 9.1e-43 177.6 143 60.8
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 9.1e-43 177.6 154 52.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.0e-42 176.4 125 68.0
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.4e-42 175.6 169 51.5
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.7e-39 166.0 136 62.5
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.9e-39 164.5 143 56.6
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.0e-38 164.1 117 72.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.3e-38 162.9 143 57.3
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 6.7e-38 161.4 155 51.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.7e-36 155.6 170 47.6
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.8e-36 155.2 151 48.3
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-33 147.5 95 74.7
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.3e-29 132.5 108 62.0
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.1e-27 125.6 116 57.8
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.0e-25 118.6 185 42.2
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 3.0e-22 109.4 90 63.3
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 1.8e-14 83.6 44 88.6
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.7e-13 78.6 78 50.0
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-10 70.1 46 78.3
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-10 70.1 46 78.3
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 4.5e-10 68.9 54 59.3
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 1.0e-09 67.8 47 74.5
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 6.5e-09 65.1 46 71.7


User provided reference genes

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