Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 4.5e-52 208.0 133 100.0
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 8.8e-48 193.7 137 94.9
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 1.7e-19 99.8 146 52.7
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 2.5e-18 95.9 144 53.5
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.6e-17 93.2 144 54.2
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 8.0e-17 90.9 148 51.4
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.4e-16 90.1 108 49.1
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 1.5e-15 86.7 108 48.1
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 1.5e-15 86.7 129 44.2
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.0e-15 86.3 107 47.7
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 2.6e-15 85.9 135 53.3
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 9.8e-15 84.0 107 48.6
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 9.8e-15 84.0 107 48.6
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 9.8e-15 84.0 96 49.0
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 1.3e-14 83.6 130 41.5
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 1.7e-14 83.2 133 41.4
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 2.2e-14 82.8 122 42.6
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 2.2e-14 82.8 97 48.5
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.8e-14 82.4 143 39.2
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 3.7e-14 82.0 148 44.6
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 1.1e-13 80.5 130 40.0
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 1.1e-13 80.5 108 43.5
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 1.1e-13 80.5 97 46.4
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 1.4e-13 80.1 108 46.3
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 1.8e-13 79.7 111 61.3
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 1.8e-13 79.7 99 46.5
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.8e-13 79.7 108 42.6
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.8e-13 79.7 108 42.6
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 3.2e-13 79.0 133 39.1
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 3.2e-13 79.0 108 45.4
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 9.2e-13 77.4 133 42.9
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 9.2e-13 77.4 112 42.9
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 9.2e-13 77.4 126 42.9
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 1.6e-12 76.6 109 43.1
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 1.6e-12 76.6 149 37.6
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 2.0e-12 76.3 98 48.0
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 2.0e-12 76.3 117 44.4
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 2.7e-12 75.9 109 44.0
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 2.7e-12 75.9 139 39.6
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 3.5e-12 75.5 112 40.2
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 3.5e-12 75.5 121 49.6
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 4.5e-12 75.1 155 45.8
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 5.9e-12 74.7 148 39.2
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 7.8e-12 74.3 135 40.7
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 7.8e-12 74.3 104 41.3
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 1.0e-11 73.9 108 50.0
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 1.0e-11 73.9 97 46.4
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 1.7e-11 73.2 123 48.0
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 2.3e-11 72.8 100 49.0
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 2.9e-11 72.4 124 48.4
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 2.9e-11 72.4 114 44.7
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 3.9e-11 72.0 96 43.8
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 5.0e-11 71.6 108 44.4
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 1.9e-10 69.7 74 48.6
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 2.5e-10 69.3 110 40.9
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.5e-10 69.3 111 41.4
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 3.3e-10 68.9 103 46.6
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 3.3e-10 68.9 96 42.7
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 5.6e-10 68.2 109 40.4
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 5.6e-10 68.2 125 40.8
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 5.6e-10 68.2 71 49.3
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 7.3e-10 67.8 110 40.9
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.1e-09 66.2 110 40.0
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 2.8e-09 65.9 110 40.9
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 2.8e-09 65.9 110 40.9
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 4.7e-09 65.1 138 37.0
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 1.0e-08 63.9 110 39.1
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.0e-08 63.9 97 52.6
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 1.0e-08 63.9 97 49.5
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 1.0e-08 63.9 97 49.5
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 1.0e-08 63.9 107 36.4
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 1.8e-08 63.2 97 63.9
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-08 63.2 107 36.4
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 2.3e-08 62.8 101 39.6
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 2.3e-08 62.8 111 36.9
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 3.1e-08 62.4 143 35.0
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 4.0e-08 62.0 110 38.2
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 4.0e-08 62.0 110 38.2
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 4.0e-08 62.0 98 39.8
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 4.0e-08 62.0 110 37.3
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 5.2e-08 61.6 126 37.3
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 6.8e-08 61.2 98 39.8
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 8.9e-08 60.8 127 35.4
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 1.2e-07 60.5 115 38.3
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 1.2e-07 60.5 115 38.3
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 1.5e-07 60.1 82 43.9
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 2.0e-07 59.7 91 49.5
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 2.6e-07 59.3 126 34.9
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 2.6e-07 59.3 107 30.8
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 2.6e-07 59.3 140 40.7
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 5.8e-07 58.2 112 37.5
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 7.5e-07 57.8 101 37.6
Glyma.04G142000 Glycine max HOM05D007435 ORTHO05D009338 1.3e-06 57.0 131 36.6
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 2.2e-06 56.2 127 37.0
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 2.2e-06 56.2 95 41.1


User provided reference genes

Program Settings