Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.3e-92 341.7 167 100.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.6e-89 332.0 174 94.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.9e-85 318.2 174 89.7
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 4.3e-84 314.7 174 88.5
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.1e-66 255.4 176 71.6
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 2.6e-65 252.3 183 67.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.9e-64 248.8 179 70.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.4e-64 247.7 183 68.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.1e-63 246.9 180 68.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 7.1e-63 244.2 179 68.7
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 9.3e-63 243.8 179 67.6
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.2e-62 243.4 175 68.0
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.6e-62 243.0 177 67.2
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.6e-62 241.5 176 67.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.3e-61 240.0 180 67.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 5.1e-61 238.0 177 65.5
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.7e-61 237.7 150 74.7
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 5.6e-60 234.6 177 66.1
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 7.4e-60 234.2 185 64.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 7.4e-60 234.2 182 64.8
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.6e-59 233.0 189 61.9
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.8e-59 232.3 149 71.8
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.7e-59 231.9 183 62.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 3.7e-59 231.9 179 64.2
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 8.1e-59 230.7 182 62.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 8.1e-59 230.7 149 71.8
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-58 230.3 185 61.6
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.4e-58 229.9 180 62.8
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.4e-58 229.2 179 64.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 4.0e-58 228.4 179 64.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.2e-57 226.9 179 62.6
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.5e-57 226.5 184 61.4
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-57 226.5 179 62.0
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.0e-57 226.1 179 62.0
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.6e-57 225.7 185 63.2
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 4.5e-57 224.9 179 63.7
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.8e-57 224.6 180 59.4
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 7.6e-57 224.2 149 71.1
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 7.6e-57 224.2 183 62.3
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 9.9e-57 223.8 222 54.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 9.9e-57 223.8 180 61.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-56 223.4 182 62.1
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-56 223.0 179 63.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.7e-56 223.0 177 62.1
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-56 222.6 180 62.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.9e-56 222.2 182 61.5
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.9e-56 222.2 179 63.1
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.9e-56 222.2 179 61.5
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.9e-56 222.2 182 60.4
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.8e-56 221.9 184 58.2
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.9e-56 221.5 179 62.6
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.9e-56 221.5 171 64.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.9e-56 221.5 183 60.1
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 6.4e-56 221.1 181 61.3
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 8.4e-56 220.7 155 67.1
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.9e-55 219.5 182 58.2
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.9e-55 219.5 184 58.7
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.2e-55 218.8 196 56.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.2e-55 218.8 193 55.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 3.2e-55 218.8 181 58.6
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.2e-55 218.8 131 74.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.2e-55 218.4 179 60.9
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 4.2e-55 218.4 129 74.4
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.5e-55 218.0 184 58.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 9.3e-55 217.2 162 63.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.2e-54 216.9 182 58.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.2e-54 216.9 162 63.6
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.6e-54 216.5 129 74.4
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 4.6e-54 214.9 181 60.2
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 4.6e-54 214.9 150 67.3
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.6e-54 214.9 189 57.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.9e-54 214.2 182 57.1
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 7.9e-54 214.2 129 73.6
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 7.9e-54 214.2 163 63.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 7.9e-54 214.2 158 65.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.0e-53 213.8 186 57.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.0e-53 213.8 141 68.1
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.0e-53 213.8 129 74.4
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.0e-53 213.8 129 74.4
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.3e-53 213.4 137 71.5
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.3e-53 213.4 144 68.1
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-53 213.0 142 68.3
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.3e-53 212.6 141 68.8
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.0e-53 212.2 171 60.2
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 3.9e-53 211.8 134 70.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 5.1e-53 211.5 179 58.1
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 6.7e-53 211.1 170 59.4
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 6.7e-53 211.1 180 59.4
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.5e-52 209.9 180 57.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.9e-52 209.5 156 64.7
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.5e-52 209.1 180 59.4
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 3.3e-52 208.8 140 70.7
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.3e-52 208.4 137 70.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 4.3e-52 208.4 223 51.6
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 5.6e-52 208.0 184 56.5
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.6e-52 208.0 171 59.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.6e-52 208.0 163 60.1
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 7.4e-52 207.6 144 66.7
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 9.6e-52 207.2 159 62.3
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 9.6e-52 207.2 140 66.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.6e-51 206.5 132 72.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 6.2e-51 204.5 181 56.9
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 8.2e-51 204.1 187 55.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.1e-50 203.8 176 57.4
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.8e-50 203.0 158 61.4
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.1e-50 202.2 150 64.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 5.3e-50 201.4 163 62.0
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 5.3e-50 201.4 171 57.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.5e-49 199.9 138 66.7
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.6e-49 199.1 174 58.6
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 7.6e-49 197.6 170 57.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 2.2e-48 196.1 193 53.9
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.2e-48 196.1 183 56.8
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 6.5e-48 194.5 246 44.7
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.2e-47 192.2 115 71.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 5.5e-47 191.4 189 51.3
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 7.1e-47 191.0 178 56.2
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.2e-46 190.3 117 70.9
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.7e-45 184.1 270 40.7
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.9e-44 183.0 128 64.8
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.4e-44 181.0 158 58.9
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.3e-42 174.9 158 55.1
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 4.5e-41 171.8 118 65.3
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.9e-40 169.1 123 61.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.5e-39 166.0 125 59.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.2e-38 163.7 124 60.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-35 153.3 87 77.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.8e-34 149.8 131 62.6
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.9e-33 144.8 108 65.7
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.9e-29 132.1 86 68.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.7e-28 128.3 72 79.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.7e-27 126.7 143 44.8
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.2e-27 126.3 79 68.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.1e-26 124.0 72 72.2
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-26 124.0 80 67.5
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.6e-25 119.4 110 58.2
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 2.9e-24 115.9 65 75.4
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.5e-24 114.8 130 50.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.0e-21 105.9 113 43.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.3e-19 100.5 102 44.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.1e-18 95.9 60 66.7
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.6e-12 76.3 83 56.6
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.7e-09 66.2 58 55.2
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 4.5e-09 65.5 35 80.0


User provided reference genes

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