Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 2.1e-92 342.4 184 100.0
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.1e-92 342.4 184 100.0
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.1e-92 342.4 184 100.0
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-71 273.5 186 85.5
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-71 273.5 186 85.5
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-67 260.4 186 83.3
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 7.4e-45 184.5 126 84.9
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 1.2e-42 177.2 102 96.1
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 1.2e-42 177.2 102 96.1
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 3.4e-42 175.6 101 95.0
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.2e-41 172.9 102 93.1
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.5e-41 171.4 102 94.1
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.5e-41 171.4 102 94.1
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.5e-41 171.4 102 94.1
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 6.5e-41 171.4 102 94.1
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 8.4e-41 171.0 102 93.1
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 8.4e-41 171.0 102 93.1
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 8.4e-41 171.0 102 94.1
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 8.4e-41 171.0 102 93.1
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 1.1e-40 170.6 102 94.1
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 1.4e-40 170.2 102 92.2
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 1.9e-40 169.9 102 93.1
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 3.2e-40 169.1 102 91.2
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 102 91.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 5.5e-40 168.3 100 92.0
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 102 91.2
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 102 91.2
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 102 91.2
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 102 91.2
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 102 91.2
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 5.5e-40 168.3 100 92.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 5.5e-40 168.3 100 92.0
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 9.3e-40 167.5 102 90.2
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.1e-39 166.4 102 92.2
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 4.6e-39 165.2 102 91.2
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 7.9e-39 164.5 102 89.2
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 3.0e-38 162.5 102 92.2
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 5.1e-38 161.8 102 88.2
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 6.7e-38 161.4 102 89.2
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.3e-37 158.7 102 86.3
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 9.6e-37 157.5 102 86.3
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.3e-36 157.1 102 89.2
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.3e-36 157.1 102 86.3
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 2.8e-36 156.0 103 80.6
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 4.8e-36 155.2 102 85.3
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 8.2e-36 154.5 102 84.3
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.4e-35 153.7 93 88.2
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.4e-35 153.7 93 88.2
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.4e-35 152.9 92 90.2
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.4e-35 152.9 92 90.2
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 4.1e-35 152.1 102 83.3
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 2.0e-34 149.8 100 83.0
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 7.6e-34 147.9 102 81.4
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.9e-32 143.3 107 78.5
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 7.2e-32 141.4 102 77.5
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.8e-30 136.7 95 81.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 6.7e-30 134.8 82 87.8
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 2.5e-29 132.9 102 79.4
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 2.5e-29 132.9 102 79.4
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 9.7e-29 131.0 95 77.9
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.8e-27 126.7 84 85.7
Lalb_Chr07g0191781 Lupinus albus HOM05D007371 ORTHO05D009319 9.0e-27 124.4 74 90.5
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 5.9e-26 121.7 99 75.8
DCAR_032539 Daucus carota HOM05D007371 ORTHO05D009319 7.2e-24 114.8 74 82.4
Medtr6g042220 Medicago truncatula HOM05D007371 ORTHO05D009319 1.2e-23 114.0 74 85.1
Migut.D01251 Erythranthe guttata HOM05D007371 ORTHO05D009319 6.1e-23 111.7 73 78.1
HanXRQChr00c0289g0573141 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr00c0336g0573671 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr02g0059721 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr09g0258501 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr15g0465431 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr15g0465461 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr17g0569721 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQChr17g0569751 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
HanXRQCPg0580341 Helianthus annuus HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
Lj2P1238T112 Lonicera japonica HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
Lju5009P0T52 Lonicera japonica HOM05D007371 ORTHO05D009319 6.1e-23 111.7 74 79.7
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 7.9e-23 111.3 104 66.3
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 7.9e-23 111.3 102 68.6
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 7.9e-23 111.3 66 87.9
PSO548G0046 Papaver somniferum HOM05D007371 ORTHO05D009319 2.3e-22 109.8 74 78.4
PGR111G0032 Punica granatum HOM05D007371 ORTHO05D009319 3.0e-22 109.4 74 79.7
Gohir.D07G194033 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.9e-22 109.0 74 81.1
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 3.9e-22 109.0 66 86.4
CAN.G1526.6 Capsicum annuum HOM05D007371 ORTHO05D009319 5.1e-22 108.6 74 78.4
CAN.G278.2 Capsicum annuum HOM05D007371 ORTHO05D009319 5.1e-22 108.6 74 78.4
CAN.G939.5 Capsicum annuum HOM05D007371 ORTHO05D009319 5.1e-22 108.6 74 78.4
Lj9P89T22 Lonicera japonica HOM05D007371 ORTHO05D009319 6.7e-22 108.2 74 77.0
TAR625G0296 Trochodendron aralioides HOM05D007371 ORTHO05D009319 6.7e-22 108.2 73 80.8
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 8.8e-22 107.8 66 84.8
Nn031s41614 Nelumbo nucifera HOM05D007371 ORTHO05D009319 8.8e-22 107.8 74 79.7
Nn064s42209 Nelumbo nucifera HOM05D007371 ORTHO05D009319 8.8e-22 107.8 74 79.7
Nn3g20215 Nelumbo nucifera HOM05D007371 ORTHO05D009319 8.8e-22 107.8 74 79.7
Gohir.1Z049431 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-21 107.5 74 79.7
Gohir.1Z049679 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-21 107.5 74 79.7
Gohir.A02G134600 Gossypium hirsutum HOM05D007371 ORTHO05D009319 1.1e-21 107.5 74 79.7
Gohir.A03G146201 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.0e-21 106.7 74 79.7
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 2.0e-21 106.7 101 67.3
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 2.5e-21 106.3 62 88.7
SalBow1G7973 Salvia bowleyana HOM05D007371 ORTHO05D009319 2.5e-21 106.3 74 73.0
Gohir.D12G089301 Gossypium hirsutum HOM05D007371 ORTHO05D009319 3.3e-21 105.9 74 78.4
RcHm_v2.0_Chr5g0017201 Rosa chinensis HOM05D007371 ORTHO05D009319 5.7e-21 105.1 73 79.5
RcHm_v2.0_CPg0502761 Rosa chinensis HOM05D007371 ORTHO05D009319 5.7e-21 105.1 73 79.5
CAN.G965.5 Capsicum annuum HOM05D007371 ORTHO05D009319 1.3e-20 104.0 74 74.3
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.3e-20 104.0 76 78.9
Gohir.A09G046246 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.2e-20 103.2 74 77.0
Thecc.08G131100 Theobroma cacao HOM05D007371 ORTHO05D009319 2.2e-20 103.2 73 78.1
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 2.8e-20 102.8 67 79.1
C09p24650 Brassica napus HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
C09p40180 Brassica napus HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BolC2t10597H Brassica oleracea HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BolSC29t60507H Brassica oleracea HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BolSC29t60622H Brassica oleracea HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BolSC35t60705H Brassica oleracea HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BolSC37t60794H Brassica oleracea HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BolSC47t61064H Brassica oleracea HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BraA10t43431Z Brassica rapa HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BraSC103t45430Z Brassica rapa HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BraSC179t45773Z Brassica rapa HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
BraSC59t46552Z Brassica rapa HOM05D007371 ORTHO05D009319 3.7e-20 102.4 74 77.0
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.7e-20 102.4 76 78.9
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 4.8e-20 102.1 65 81.5
RcHm_v2.0_Chr5g0043021 Rosa chinensis HOM05D007371 ORTHO05D009319 4.8e-20 102.1 73 78.1
BolC9t56922H Brassica oleracea HOM05D007371 ORTHO05D009319 1.1e-19 100.9 74 74.3
CARHR282450 Cardamine hirsuta HOM05D007371 ORTHO05D009319 1.4e-19 100.5 74 74.3
Solyc03g013600.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.4e-19 100.5 74 74.3
Solyc02g011770.1 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.8e-19 100.1 74 71.6
BraSC25t45911Z Brassica rapa HOM05D007371 ORTHO05D009319 5.3e-19 98.6 70 77.1
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 5.3e-19 98.6 77 74.0
AL9U11956 Arabidopsis lyrata HOM05D007371 ORTHO05D009319 6.9e-19 98.2 74 73.0
ATCG01080 Arabidopsis thaliana HOM05D007371 ORTHO05D009319 6.9e-19 98.2 74 73.0
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 1.2e-18 97.4 67 79.1
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 1.5e-18 97.1 59 89.8
Gohir.D06G133700 Gossypium hirsutum HOM05D007371 ORTHO05D009319 2.0e-18 96.7 73 75.3
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 4.5e-18 95.5 54 88.9
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 7.7e-18 94.7 62 85.5
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 1.3e-17 94.0 59 81.4
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.7e-17 93.6 74 64.9
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.9e-17 92.8 55 87.3
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 5.0e-17 92.0 75 74.7
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.4e-16 90.5 96 62.5
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 1.4e-16 90.5 74 73.0
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-16 90.1 73 65.8
C09p40330 Brassica napus HOM05D007371 ORTHO05D009319 2.5e-16 89.7 76 73.7
RcHm_v2.0_Chr4g0438011 Rosa chinensis HOM05D007371 ORTHO05D009319 5.5e-16 88.6 58 82.8
Peaxi162Scf00338g00628 Petunia axillaris HOM05D007371 ORTHO05D009319 1.2e-15 87.4 59 79.7
arahy.Tifrunner.gnm1.ann1.UDKX9E Arachis hypogaea HOM05D000890 ORTHO05D000697 7.9e-15 84.7 40 100.0
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 1.0e-14 84.3 52 84.6
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 1.0e-14 84.3 52 84.6
Nitab4.5_0007979g0070 Nicotiana tabacum HOM05D007371 ORTHO05D009319 2.3e-14 83.2 59 78.0
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 3.9e-14 82.4 51 84.3
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 8.8e-14 81.3 102 55.9
HanXRQChr05g0152451 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-14 81.3 51 78.4
HanXRQChr08g0211951 Helianthus annuus HOM05D007371 ORTHO05D009319 8.8e-14 81.3 51 78.4
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 2.6e-13 79.7 53 83.0
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 4.4e-13 79.0 51 82.4
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 4.4e-13 79.0 47 93.6
Gohir.D04G175100 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.4e-13 78.2 52 76.9
Gorai.005G189900 Gossypium raimondii HOM05D007371 ORTHO05D009319 2.2e-12 76.6 55 72.7
Nn1g08633 Nelumbo nucifera HOM05D007371 ORTHO05D009319 2.2e-12 76.6 61 70.5
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 8.2e-12 74.7 100 49.0
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.1e-11 74.3 51 76.5
Glyma.19G081000 Glycine max HOM05D007371 ORTHO05D009319 1.8e-11 73.6 40 90.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 1.2e-10 70.9 41 85.4
Solyc07g026910.3 Solanum lycopersicum HOM05D007371 ORTHO05D009319 1.6e-10 70.5 52 69.2
CAN.G256.22 Capsicum annuum HOM05D007371 ORTHO05D009319 5.9e-10 68.6 40 75.0
BraSC58t46462Z Brassica rapa HOM05D007371 ORTHO05D009319 2.2e-09 66.6 52 67.3
Gohir.D02G169550 Gossypium hirsutum HOM05D007371 ORTHO05D009319 7.2e-08 61.6 55 65.5
Mapoly0048s0040 Marchantia polymorpha HOM05D007371 ORTHO05D009319 9.4e-08 61.2 79 46.8
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 1.2e-07 60.8 41 78.0
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 1.8e-06 57.0 79 43.0
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 3.0e-06 56.2 30 93.3
Hund24330 Selenicereus undatus HOM05D007371 ORTHO05D009319 3.0e-06 56.2 42 61.9
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 6.7e-06 55.1 79 45.6


User provided reference genes

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