Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4VC5Q7 Arachis hypogaea HOM05D006868 ORTHO05D008444 6.2e-139 497.7 291 100.0
arahy.Tifrunner.gnm1.ann1.0CE3F9 Arachis hypogaea HOM05D006868 ORTHO05D008444 7.0e-98 361.3 287 81.5
Phvul.008G185600 Phaseolus vulgaris HOM05D006868 ORTHO05D008444 3.2e-87 325.9 287 64.1
LjContig00408g0011230 Lotus japonicus HOM05D006868 ORTHO05D008444 9.4e-87 324.3 288 64.6
Lalb_Chr17g0344691 Lupinus albus HOM05D006868 ORTHO05D008444 1.6e-86 323.6 208 80.8
Glyma.02G218700 Glycine max HOM05D006868 ORTHO05D008444 2.7e-86 322.8 287 65.9
Psat2g063200 Pisum sativum HOM05D006868 ORTHO05D008444 3.3e-84 315.8 208 78.8
Haze_17362 Corylus avellana HOM05D006868 ORTHO05D008444 7.5e-84 314.7 208 77.4
Ca_05512_v3 Cicer arietinum L. HOM05D006868 ORTHO05D008444 1.7e-83 313.5 208 77.4
Cpa.g.sc19.51 Carica papaya HOM05D006868 ORTHO05D008444 2.8e-83 312.8 287 59.9
COL.COLO4_10032 Corchorus olitorius HOM05D006868 ORTHO05D008444 2.8e-83 312.8 208 75.5
Thecc.10G177500 Theobroma cacao HOM05D006868 ORTHO05D008444 4.8e-83 312.0 208 74.5
Medtr5g067640 Medicago truncatula HOM05D006868 ORTHO05D008444 8.3e-83 311.2 208 77.9
Dinv21851 Davidia involucrata HOM05D006868 ORTHO05D008444 4.1e-82 308.9 208 75.0
Ciclev10031473m.g Citrus clementina HOM05D006868 ORTHO05D008444 7.0e-82 308.1 208 73.6
Duzib114G0133 Durio zibethinus HOM05D006868 ORTHO05D008444 9.1e-82 307.8 208 74.5
Manes.07G142700 Manihot esculenta HOM05D006868 ORTHO05D008444 1.2e-81 307.4 208 73.1
Eucgr.G03143 Eucalyptus grandis HOM05D006868 ORTHO05D008444 2.7e-81 306.2 208 75.0
Actinidia13645 Actinidia chinensis HOM05D006868 ORTHO05D008444 3.5e-81 305.8 208 73.6
CSS0030170 Camellia sinensis var. sinensis HOM05D006868 ORTHO05D008444 3.5e-81 305.8 287 63.4
Gorai.012G015200 Gossypium raimondii HOM05D006868 ORTHO05D008444 3.5e-81 305.8 208 74.5
QL08p064908 Quercus lobata HOM05D006868 ORTHO05D008444 3.5e-81 305.8 209 76.1
VMungo0647G1252 Vigna mungo HOM05D006868 ORTHO05D008444 3.5e-81 305.8 337 54.9
GSVIVG01032665001 Vitis vinifera HOM05D000001 ORTHO05D008444 4.5e-81 305.4 208 73.6
Gohir.D04G012900 Gossypium hirsutum HOM05D006868 ORTHO05D008444 1.0e-80 304.3 208 74.0
PGR142G3010 Punica granatum HOM05D006868 ORTHO05D008444 1.0e-80 304.3 208 72.6
EL10Ac2g02654 Beta vulgaris HOM05D006868 ORTHO05D008444 1.3e-80 303.9 207 73.9
THA.LOC104813883 Tarenaya hassleriana HOM05D006868 ORTHO05D008444 1.3e-80 303.9 208 74.5
Oeu054415.1 Olea europaea HOM05D006868 ORTHO05D008444 1.7e-80 303.5 208 72.6
Ah.10g029580 Amaranthus hybridus HOM05D006868 ORTHO05D008444 2.2e-80 303.1 208 74.0
CANSAT56G1982 Cannabis sativa HOM05D006868 ORTHO05D008444 2.2e-80 303.1 208 73.6
Cc02_g05320 Coffea canephora HOM05D006868 ORTHO05D008444 2.2e-80 303.1 208 72.1
Prupe.2G264600 Prunus persica HOM05D006868 ORTHO05D008444 3.8e-80 302.4 208 74.0
Gohir.A05G402600 Gossypium hirsutum HOM05D006868 ORTHO05D008444 5.0e-80 302.0 208 74.0
FAN03G1483 Fragaria x ananassa HOM05D006868 ORTHO05D008444 6.5e-80 301.6 208 74.5
FAN10G3251 Fragaria x ananassa HOM05D006868 ORTHO05D008444 6.5e-80 301.6 208 74.5
Rhsim03G0153100 Rhododendron simsii HOM05D006868 ORTHO05D008444 1.9e-79 300.1 209 72.7
FAN06G3111 Fragaria x ananassa HOM05D006868 ORTHO05D008444 2.5e-79 299.7 208 73.6
RcHm_v2.0_Chr1g0372371 Rosa chinensis HOM05D006868 ORTHO05D008444 2.5e-79 299.7 208 74.5
TPR.G27028 Trifolium pratense HOM05D006868 ORTHO05D008444 2.5e-79 299.7 280 61.1
Potri.013G090900 Populus trichocarpa HOM05D006868 ORTHO05D008444 4.2e-79 298.9 209 72.7
Hund13444 Selenicereus undatus HOM05D006868 ORTHO05D008444 7.2e-79 298.1 208 73.6
Thhalv10016719m.g Eutrema salsugineum HOM05D006868 ORTHO05D008444 1.2e-78 297.4 208 72.6
AT2G40690 Arabidopsis thaliana HOM05D006868 ORTHO05D008444 2.7e-78 296.2 208 73.6
Carub.0004s2298 Capsella rubella HOM05D006868 ORTHO05D008444 2.7e-78 296.2 208 72.1
Lsat_1_v5_gn_9_60160 Lactuca sativa HOM05D006868 ORTHO05D008444 2.7e-78 296.2 208 72.6
Sp4g23010 Schrenkiella parvula HOM05D006868 ORTHO05D008444 2.7e-78 296.2 208 73.1
CARHR135790 Cardamine hirsuta HOM05D006868 ORTHO05D008444 3.6e-78 295.8 208 73.1
PSO017G2385 Papaver somniferum HOM05D006868 ORTHO05D008444 3.6e-78 295.8 208 71.6
FvH4_7g25990 Fragaria vesca HOM05D006868 ORTHO05D008444 4.7e-78 295.4 208 73.1
PSO170G6852 Papaver somniferum HOM05D006868 ORTHO05D008444 4.7e-78 295.4 208 71.6
SalBow3G4174 Salvia bowleyana HOM05D006868 ORTHO05D008444 4.7e-78 295.4 208 73.6
Sc10g0003020 Simmondsia chinensis HOM05D006868 ORTHO05D008444 4.7e-78 295.4 208 72.1
Sabra13G0070500 Salix brachista HOM05D006868 ORTHO05D008444 1.0e-77 294.3 209 71.8
ECA232G1245 Erigeron canadensis HOM05D006868 ORTHO05D008444 1.4e-77 293.9 208 73.1
SGA_v2.0_scaffold60G20887 Striga asiatica HOM05D006868 ORTHO05D008444 1.4e-77 293.9 208 72.1
DCAR_018040 Daucus carota HOM05D006868 ORTHO05D008444 1.8e-77 293.5 208 70.7
AL4G38560 Arabidopsis lyrata HOM05D006868 ORTHO05D008444 2.3e-77 293.1 208 72.1
Aa31LG3G1440 Aethionema arabicum HOM05D006868 ORTHO05D008444 3.0e-77 292.7 208 71.6
Nn2g10288 Nelumbo nucifera HOM05D006868 ORTHO05D008444 3.0e-77 292.7 208 72.1
Migut.F00577 Erythranthe guttata HOM05D006868 ORTHO05D008444 6.8e-77 291.6 211 71.6
ClCG07G005190 Citrullus lanatus HOM05D006868 ORTHO05D008444 1.2e-76 290.8 210 71.0
MD07G1234300 Malus domestica HOM05D006868 ORTHO05D008444 1.2e-76 290.8 208 70.2
BcaC02g07329 Brassica carinata HOM05D006868 ORTHO05D008444 1.5e-76 290.4 208 71.2
C04p68480 Brassica napus HOM05D006868 ORTHO05D008444 1.5e-76 290.4 208 71.2
BcaB06g29168 Brassica carinata HOM05D006868 ORTHO05D008444 2.0e-76 290.0 208 71.2
A04p31090 Brassica napus HOM05D006868 ORTHO05D008444 2.0e-76 290.0 208 71.2
BolC4t28348H Brassica oleracea HOM05D006868 ORTHO05D008444 2.0e-76 290.0 208 71.2
BraA04t18564Z Brassica rapa HOM05D006868 ORTHO05D008444 2.0e-76 290.0 208 71.2
CAN.G24.1 Capsicum annuum HOM05D006868 ORTHO05D008444 2.6e-76 289.7 208 71.2
HanXRQChr15g0493721 Helianthus annuus HOM05D006868 ORTHO05D008444 2.6e-76 289.7 208 71.2
Aqoxy1G01258 Aquilegia oxysepala HOM05D006868 ORTHO05D008444 5.7e-76 288.5 211 70.1
PGSC0003DMG400016644 Solanum tuberosum HOM05D006868 ORTHO05D008444 1.3e-75 287.3 208 70.2
Solyc06g048920.4 Solanum lycopersicum HOM05D006868 ORTHO05D008444 2.2e-75 286.6 208 70.2
Sopen06g015240 Solanum pennellii HOM05D006868 ORTHO05D008444 2.2e-75 286.6 208 70.2
Sed0006945 Sechium edule HOM05D006868 ORTHO05D008444 1.1e-74 284.3 208 70.2
MELO3C020157.2 Cucumis melo HOM05D006868 ORTHO05D008444 3.1e-74 282.7 208 70.7
CsaV3_5G011040 Cucumis sativus L. HOM05D006868 ORTHO05D008444 6.6e-72 275.0 208 69.2
HPP92_019052 Vanilla planifolia HOM05D006868 ORTHO05D008444 7.2e-71 271.6 208 66.3
Zm00001eb303710 Zea mays HOM05D006868 ORTHO05D008444 2.8e-70 269.6 208 66.3
AUR62024939 Chenopodium quinoa HOM05D006868 ORTHO05D008444 3.7e-67 259.2 148 84.5
CDE04G1289 Ceratophyllum demersum HOM05D006868 ORTHO05D008444 4.9e-67 258.8 206 65.5
Peaxi162Scf00739g00427 Petunia axillaris HOM05D006868 ORTHO05D008444 1.1e-66 257.7 156 79.5
CDE12G0946 Ceratophyllum demersum HOM05D006868 ORTHO05D008444 2.4e-66 256.5 206 65.0
ATR1127G100 Amborella trichopoda HOM05D006868 ORTHO05D008444 3.5e-65 252.7 211 62.1
Lj1A968G51 Lonicera japonica HOM05D006868 ORTHO05D008444 4.5e-65 252.3 148 81.8
Nitab4.5_0000171g0160 Nicotiana tabacum HOM05D006868 ORTHO05D008444 5.0e-64 248.8 208 64.9
AUR62030605 Chenopodium quinoa HOM05D006868 ORTHO05D008444 1.0e-61 241.1 175 70.3
FAN01G2299 Fragaria x ananassa HOM05D006868 ORTHO05D008444 3.1e-61 239.6 182 68.7
Mapoly0076s0092 Marchantia polymorpha HOM05D006868 ORTHO05D008444 7.8e-57 224.9 211 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1137 Anthoceros agrestis HOM05D006868 ORTHO05D008444 6.6e-56 221.9 210 54.3
Pp3c1_10090 Physcomitrium patens HOM05D006868 ORTHO05D008444 3.3e-55 219.5 209 52.6
Pp3c2_32750 Physcomitrium patens HOM05D006868 ORTHO05D008444 7.3e-55 218.4 210 53.3
TAR633G2670 Trochodendron aralioides HOM05D006868 ORTHO05D008444 1.1e-47 194.5 224 51.8
Hma1.2p1_0264F.1_g106070 Hydrangea macrophylla HOM05D006868 ORTHO05D008444 9.5e-47 191.4 141 68.8
Actinidia31629 Actinidia chinensis HOM05D006868 ORTHO05D008444 6.2e-46 188.7 126 71.4
MCO03G330 Micromonas commoda HOM05D006868 ORTHO05D008444 4.9e-35 152.5 196 45.4
Os07g0229800 Oryza sativa ssp. japonica HOM05D006868 ORTHO05D008444 6.4e-35 152.1 139 56.8
Cre12.g511150 Chlamydomonas reinhardtii HOM05D006868 ORTHO05D008444 3.2e-34 149.8 169 47.3
PRCOL_00000183 Prasinoderma coloniale HOM05D006868 ORTHO05D008444 1.1e-31 141.4 150 50.0
AUR62042095 Chenopodium quinoa HOM05D006868 ORTHO05D008444 3.6e-30 136.3 81 79.0
Thecc.10G176600 Theobroma cacao HOM05D006868 ORTHO05D008444 6.4e-19 99.0 71 66.2
SEGI_34201 Sequoiadendron giganteum HOM05D006868 ORTHO05D008444 1.3e-14 84.7 108 45.4
Cre09.g387763 Chlamydomonas reinhardtii HOM05D006868 ORTHO05D008444 2.1e-14 84.0 150 34.7
Ca_29312_v3 Cicer arietinum L. HOM05D006868 ORTHO05D008444 3.0e-08 63.5 147 28.6


User provided reference genes

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