Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 1.3e-18 95.9 67 100.0
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 2.4e-17 91.7 67 97.0
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 1.7e-15 85.5 67 85.1
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 1.7e-15 85.5 67 89.6
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 2.2e-15 85.1 67 86.6
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 3.2e-14 81.3 67 79.1
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 5.5e-14 80.5 67 83.6
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 7.1e-14 80.1 67 82.1
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 2.7e-13 78.2 67 82.1
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 3.5e-13 77.8 67 85.1
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 1.8e-12 75.5 67 83.6
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 1.8e-12 75.5 67 79.1
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 3.0e-12 74.7 64 85.9
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 6.7e-12 73.6 67 76.1
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 8.7e-12 73.2 65 64.6
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 1.9e-11 72.0 66 77.3
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 3.3e-11 71.2 60 65.0
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 4.3e-11 70.9 60 91.7
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 4.3e-11 70.9 66 65.2
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 4.3e-11 70.9 66 65.2
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 4.3e-11 70.9 66 65.2
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 4.3e-11 70.9 66 65.2
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 4.3e-11 70.9 66 65.2
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 4.3e-11 70.9 62 72.6
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 4.3e-11 70.9 68 76.5
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 4.3e-11 70.9 68 76.5
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 4.3e-11 70.9 64 64.1
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 7.4e-11 70.1 60 65.0
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 9.6e-11 69.7 59 76.3
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 9.6e-11 69.7 63 81.0
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 1.3e-10 69.3 59 67.8
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 1.6e-10 68.9 64 79.7
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 2.8e-10 68.2 64 60.9
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 3.7e-10 67.8 67 74.6
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 3.7e-10 67.8 60 70.0
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 3.7e-10 67.8 67 76.1
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 3.7e-10 67.8 67 73.1
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 8.2e-10 66.6 66 75.8
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 1.4e-09 65.9 60 61.7
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 1.8e-09 65.5 66 62.1
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 1.8e-09 65.5 66 59.1
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 1.8e-09 65.5 63 74.6
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 1.8e-09 65.5 66 66.7
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 2.4e-09 65.1 60 63.3
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 2.4e-09 65.1 59 64.4
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 4.0e-09 64.3 40 92.5
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 4.0e-09 64.3 62 71.0
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 4.0e-09 64.3 64 78.1
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 9.0e-09 63.2 67 59.7
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 9.0e-09 63.2 67 59.7
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 1.2e-08 62.8 66 69.7
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 1.2e-08 62.8 66 69.7
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 1.2e-08 62.8 40 90.0
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 1.2e-08 62.8 40 87.5
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 1.5e-08 62.4 67 67.2
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 2.0e-08 62.0 40 85.0
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 2.6e-08 61.6 67 58.2
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 3.4e-08 61.2 39 84.6
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 4.5e-08 60.8 65 61.5
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 1.3e-07 59.3 36 88.9
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 1.3e-07 59.3 40 85.0
Glyma.08G192400 Glycine max HOM05D007812 ORTHO05D009912 1.3e-07 59.3 61 78.7
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 86.8
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 1.7e-07 58.9 36 86.1
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 2.2e-07 58.5 39 82.1
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 2.9e-07 58.2 67 61.2
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 3.8e-07 57.8 66 57.6
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.9e-07 57.4 37 83.8
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 4.9e-07 57.4 37 83.8
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 4.9e-07 57.4 37 83.8
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 6.5e-07 57.0 38 84.2
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 6.5e-07 57.0 36 80.6
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 8.4e-07 56.6 67 68.7
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 1.9e-06 55.5 67 55.2
Sabra03G0023900 Salix brachista HOM05D010635 ORTHO05D006336 3.2e-06 54.7 40 77.5
unitig_88.g27591 Utricularia gibba HOM05D007812 ORTHO05D009912 3.2e-06 54.7 70 65.7
CANSAT56G4159 Cannabis sativa HOM05D007812 ORTHO05D009912 9.3e-06 53.1 67 67.2


User provided reference genes

Program Settings