Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4S56Q7 Arachis hypogaea HOM05D005939 ORTHO05D026929 1.8e-96 355.9 179 100.0
arahy.Tifrunner.gnm1.ann1.A48KP8 Arachis hypogaea HOM05D005939 ORTHO05D007412 5.3e-48 194.9 149 76.5
arahy.Tifrunner.gnm1.ann1.AL6ICI Arachis hypogaea HOM05D005939 ORTHO05D007412 1.1e-29 134.0 130 62.3
arahy.Tifrunner.gnm1.ann1.2A1NT4 Arachis hypogaea HOM05D005939 ORTHO05D007412 4.7e-28 128.6 67 95.5
arahy.Tifrunner.gnm1.ann1.K9Q8M8 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.4e-27 127.1 67 94.0
arahy.Tifrunner.gnm1.ann1.6CLX5T Arachis hypogaea HOM05D005939 ORTHO05D026929 2.6e-23 112.8 119 58.8
Lalb_Chr03g0026021 Lupinus albus HOM05D005939 ORTHO05D007412 3.5e-23 112.5 67 80.6
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 5.9e-23 111.7 67 79.1
Glyma.11G124900 Glycine max HOM05D005939 ORTHO05D007412 1.7e-22 110.2 67 77.6
Medtr4g068190 Medicago truncatula HOM05D005939 ORTHO05D007412 5.5e-21 105.1 66 78.8
Glyma.12G049500 Glycine max HOM05D005939 ORTHO05D007412 7.2e-21 104.8 68 76.5
Cpa.g.sc9.337 Carica papaya HOM05D005939 ORTHO05D007412 1.6e-20 103.6 61 80.3
Phvul.011G051700 Phaseolus vulgaris HOM05D005939 ORTHO05D007412 2.1e-20 103.2 65 73.8
Lj3g0005991 Lotus japonicus HOM05D005939 ORTHO05D007412 2.7e-20 102.8 67 71.6
CiPaw.01G172900 Carya illinoinensis HOM05D005939 ORTHO05D007412 8.0e-20 101.3 61 78.7
Ciclev10021893m.g Citrus clementina HOM05D005939 ORTHO05D007412 1.0e-19 100.9 66 71.2
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 1.0e-19 100.9 61 77.0
Dinv44170 Davidia involucrata HOM05D005939 ORTHO05D007412 1.8e-19 100.1 61 77.0
arahy.Tifrunner.gnm1.ann1.KLQZ1V Arachis hypogaea HOM05D005939 ORTHO05D007412 2.3e-19 99.8 51 96.1
QL10p052591 Quercus lobata HOM05D005939 ORTHO05D007412 3.0e-19 99.4 61 75.4
Ca_20809_v3 Cicer arietinum L. HOM05D005939 ORTHO05D007412 4.0e-19 99.0 67 76.1
ClCG07G015100 Citrullus lanatus HOM05D005939 ORTHO05D007412 4.0e-19 99.0 65 70.8
CANSAT64G1160 Cannabis sativa HOM05D005939 ORTHO05D007412 5.2e-19 98.6 61 80.3
MELO3C017776.2 Cucumis melo HOM05D005939 ORTHO05D007412 8.8e-19 97.8 65 70.8
PSO017G1523 Papaver somniferum HOM05D005939 ORTHO05D007412 1.2e-18 97.4 61 77.0
arahy.Tifrunner.gnm1.ann1.D82PE3 Arachis hypogaea HOM05D005939 ORTHO05D007412 1.5e-18 97.1 52 92.3
Sed0015623 Sechium edule HOM05D005939 ORTHO05D007412 1.5e-18 97.1 65 70.8
Lj2C294T20 Lonicera japonica HOM05D005939 ORTHO05D007412 2.0e-18 96.7 67 67.2
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 2.0e-18 96.7 61 73.8
TPR.G34240 Trifolium pratense HOM05D005939 ORTHO05D007412 2.0e-18 96.7 66 74.2
Manes.04G037900 Manihot esculenta HOM05D005939 ORTHO05D007412 2.6e-18 96.3 61 75.4
AUR62023817 Chenopodium quinoa HOM05D000031 ORTHO05D007412 3.4e-18 95.9 68 72.1
PSO675G4893 Papaver somniferum HOM05D005939 ORTHO05D007412 3.4e-18 95.9 61 75.4
Thecc.04G170700 Theobroma cacao HOM05D005939 ORTHO05D007412 3.4e-18 95.9 66 68.2
TAR365G0833 Trochodendron aralioides HOM05D005939 ORTHO05D007412 3.4e-18 95.9 61 75.4
arahy.Tifrunner.gnm1.ann1.1BT4II Arachis hypogaea HOM05D005939 ORTHO05D007412 4.4e-18 95.5 52 90.4
CsaV3_4G002650 Cucumis sativus L. HOM05D005939 ORTHO05D007412 4.4e-18 95.5 65 69.2
Hma1.2p1_1220F.1_g268050 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 5.7e-18 95.1 61 72.1
Psat7g208400 Pisum sativum HOM05D005939 ORTHO05D007412 7.5e-18 94.7 69 71.0
arahy.Tifrunner.gnm1.ann1.LDUK9I Arachis hypogaea HOM05D005939 ORTHO05D007412 9.8e-18 94.4 51 88.2
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 9.8e-18 94.4 61 70.5
Actinidia27098 Actinidia chinensis HOM05D005939 ORTHO05D007412 1.7e-17 93.6 61 72.1
CSS0033753 Camellia sinensis var. sinensis HOM05D005939 ORTHO05D007412 2.2e-17 93.2 61 72.1
AUR62002369 Chenopodium quinoa HOM05D005939 ORTHO05D007412 2.2e-17 93.2 68 70.6
Eucgr.C02176 Eucalyptus grandis HOM05D005939 ORTHO05D007412 2.2e-17 93.2 61 72.1
Atru.chr4.1353 Acer truncatum HOM05D005939 ORTHO05D007412 3.7e-17 92.4 64 71.9
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 3.7e-17 92.4 61 72.1
arahy.Tifrunner.gnm1.ann1.V738A9 Arachis hypogaea HOM05D005939 ORTHO05D007412 4.8e-17 92.0 52 88.5
Gohir.D02G110500 Gossypium hirsutum HOM05D005939 ORTHO05D007412 8.3e-17 91.3 61 70.5
Gorai.005G125400 Gossypium raimondii HOM05D005939 ORTHO05D007412 8.3e-17 91.3 61 70.5
EL10Ac3g06033 Beta vulgaris HOM05D005939 ORTHO05D007412 1.8e-16 90.1 61 68.9
Thhalv10001621m.g Eutrema salsugineum HOM05D005939 ORTHO05D007412 2.4e-16 89.7 65 69.2
Duzib212G0518 Durio zibethinus HOM05D005939 ORTHO05D007412 3.1e-16 89.4 66 66.7
TAR371G0104 Trochodendron aralioides HOM05D000577 ORTHO05D001093 3.1e-16 89.4 61 70.5
ECA238G2261 Erigeron canadensis HOM05D005939 ORTHO05D007412 4.1e-16 89.0 61 68.9
PGSC0003DMG400015011 Solanum tuberosum HOM05D005939 ORTHO05D007412 5.4e-16 88.6 67 70.1
THA.LOC104803948 Tarenaya hassleriana HOM05D005939 ORTHO05D007412 7.0e-16 88.2 65 64.6
Zm00001eb037280 Zea mays HOM05D005939 ORTHO05D007412 7.0e-16 88.2 65 66.2
Gohir.A02G092400 Gossypium hirsutum HOM05D005939 ORTHO05D007412 9.1e-16 87.8 61 68.9
RcHm_v2.0_Chr4g0406301 Rosa chinensis HOM05D005939 ORTHO05D007412 9.1e-16 87.8 66 62.1
Solyc04g015040.3 Solanum lycopersicum HOM05D005939 ORTHO05D007412 9.1e-16 87.8 67 68.7
Sopen04g007060 Solanum pennellii HOM05D005939 ORTHO05D007412 9.1e-16 87.8 67 68.7
Cc06_g20200 Coffea canephora HOM05D005939 ORTHO05D007412 1.2e-15 87.4 61 67.2
Sp4g25670 Schrenkiella parvula HOM05D005939 ORTHO05D007412 1.2e-15 87.4 68 64.7
CAN.G1263.30 Capsicum annuum HOM05D005939 ORTHO05D007412 1.6e-15 87.0 66 71.2
Ah.13g073680 Amaranthus hybridus HOM05D005939 ORTHO05D007412 2.0e-15 86.7 61 70.5
Peaxi162Scf00811g00112 Petunia axillaris HOM05D005939 ORTHO05D007412 2.0e-15 86.7 62 71.0
Aa31LG1G25290 Aethionema arabicum HOM05D005939 ORTHO05D007412 2.7e-15 86.3 66 63.6
Potri.017G017500 Populus trichocarpa HOM05D005939 ORTHO05D007412 2.7e-15 86.3 65 70.8
arahy.Tifrunner.gnm1.ann1.51RH0H Arachis hypogaea HOM05D005939 ORTHO05D007412 4.5e-15 85.5 46 89.1
Hund03189 Selenicereus undatus HOM05D005939 ORTHO05D007412 4.5e-15 85.5 67 65.7
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 7.7e-15 84.7 61 65.6
Haze_01409 Corylus avellana HOM05D005939 ORTHO05D007412 1.3e-14 84.0 90 51.1
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 1.3e-14 84.0 61 63.9
Lsat_1_v5_gn_2_34361 Lactuca sativa HOM05D005939 ORTHO05D007412 1.7e-14 83.6 65 64.6
Potri.007G134600 Populus trichocarpa HOM05D005939 ORTHO05D007412 1.7e-14 83.6 65 70.8
Nitab4.5_0006294g0010 Nicotiana tabacum HOM05D005939 ORTHO05D007412 2.2e-14 83.2 67 68.7
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 2.2e-14 83.2 65 66.2
AT2G43560 Arabidopsis thaliana HOM05D005939 ORTHO05D007412 2.9e-14 82.8 66 65.2
HanXRQChr14g0433821 Helianthus annuus HOM05D005939 ORTHO05D007412 2.9e-14 82.8 61 65.6
Haze_01405 Corylus avellana HOM05D005939 ORTHO05D007412 3.8e-14 82.4 90 50.0
FvH4_4g10650 Fragaria vesca HOM05D005939 ORTHO05D007412 3.8e-14 82.4 62 64.5
FAN07G1487 Fragaria x ananassa HOM05D005939 ORTHO05D007412 3.8e-14 82.4 62 64.5
FAN12G0599 Fragaria x ananassa HOM05D005939 ORTHO05D007412 3.8e-14 82.4 62 64.5
FAN12G1526 Fragaria x ananassa HOM05D005939 ORTHO05D007412 3.8e-14 82.4 62 64.5
FAN12G3158 Fragaria x ananassa HOM05D005939 ORTHO05D007412 3.8e-14 82.4 62 64.5
Sabra17G0005000 Salix brachista HOM05D005939 ORTHO05D007412 6.5e-14 81.6 65 69.2
Sabra17G0013700 Salix brachista HOM05D005939 ORTHO05D007412 6.5e-14 81.6 65 69.2
Carub.0004s2605 Capsella rubella HOM05D005939 ORTHO05D007412 8.5e-14 81.3 62 67.7
BcaB06g29327 Brassica carinata HOM05D005939 ORTHO05D007412 1.5e-13 80.5 65 66.2
AL4G42360 Arabidopsis lyrata HOM05D005939 ORTHO05D007412 1.9e-13 80.1 62 67.7
Gohir.D07G207866 Gossypium hirsutum HOM05D005939 ORTHO05D007412 1.9e-13 80.1 57 68.4
BcaC02g07165 Brassica carinata HOM05D005939 ORTHO05D007412 2.5e-13 79.7 65 66.2
A04p32840 Brassica napus HOM05D005939 ORTHO05D007412 2.5e-13 79.7 65 66.2
C04p70550 Brassica napus HOM05D005939 ORTHO05D007412 2.5e-13 79.7 65 66.2
BolC4t28556H Brassica oleracea HOM05D005939 ORTHO05D007412 2.5e-13 79.7 65 66.2
BraA04t18746Z Brassica rapa HOM05D005939 ORTHO05D007412 2.5e-13 79.7 65 66.2
Nitab4.5_0000147g0370 Nicotiana tabacum HOM05D005939 ORTHO05D007412 2.5e-13 79.7 53 75.5
Aqoxy2G04151 Aquilegia oxysepala HOM05D005939 ORTHO05D007412 3.2e-13 79.3 69 62.3
Sc05g0005150 Simmondsia chinensis HOM05D005939 ORTHO05D007412 3.2e-13 79.3 62 67.7
Gorai.001G234400 Gossypium raimondii HOM05D005939 ORTHO05D007412 5.5e-13 78.6 57 66.7
HPP92_001251 Vanilla planifolia HOM05D005939 ORTHO05D007412 1.2e-12 77.4 61 62.3
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 2.7e-12 76.3 49 73.5
Oeu032137.1 Olea europaea HOM05D005939 ORTHO05D007412 3.6e-12 75.9 61 62.3
HPP92_001268 Vanilla planifolia HOM05D005939 ORTHO05D007412 3.6e-12 75.9 61 60.7
CDE02G1670 Ceratophyllum demersum HOM05D005939 ORTHO05D007412 4.7e-12 75.5 57 59.6
PGR044G0374 Punica granatum HOM05D005939 ORTHO05D007412 4.7e-12 75.5 89 48.3
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.7e-12 75.5 49 73.5
ATR0743G264 Amborella trichopoda HOM05D005939 ORTHO05D007412 6.1e-12 75.1 63 63.5
unitig_578.g16716 Utricularia gibba HOM05D005939 ORTHO05D007412 5.2e-11 72.0 49 69.4
CANSAT35G0154 Cannabis sativa HOM05D005939 ORTHO05D007412 6.8e-11 71.6 46 76.1
CANSAT54G1728 Cannabis sativa HOM05D005939 ORTHO05D007412 6.8e-11 71.6 46 76.1
TAR374G0473 Trochodendron aralioides HOM05D005939 ORTHO05D007412 8.8e-11 71.2 49 71.4
Hma1.2p1_1220F.1_g268040 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 2.6e-10 69.7 46 67.4
arahy.Tifrunner.gnm1.ann1.W5M1I0 Arachis hypogaea HOM05D002230 ORTHO05D002441 5.7e-10 68.6 79 58.2
arahy.Tifrunner.gnm1.ann1.XT66D5 Arachis hypogaea HOM05D002230 ORTHO05D002441 9.8e-10 67.8 79 58.2
Nn1g09731 Nelumbo nucifera HOM05D005939 ORTHO05D007412 2.2e-09 66.6 46 71.7
Mapoly0034s0118 Marchantia polymorpha HOM05D005939 ORTHO05D007412 1.6e-07 60.5 57 56.1
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 3.5e-07 59.3 42 66.7
SalBow6G6570 Salvia bowleyana HOM05D000739 ORTHO05D007412 4.5e-07 58.9 46 58.7
Gohir.A10G186300 Gossypium hirsutum HOM05D005939 ORTHO05D007412 7.7e-07 58.2 68 45.6
Pp3c4_8140 Physcomitrium patens HOM05D005939 ORTHO05D007412 1.3e-06 57.4 62 51.6


User provided reference genes

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