Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1645.9 829 100.0
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1623.6 829 98.7
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 0.0e+00 1207.2 927 70.2
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 0.0e+00 1143.3 932 68.0
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 0.0e+00 1141.7 933 68.0
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 0.0e+00 1139.4 933 67.4
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 0.0e+00 1138.3 933 67.1
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 0.0e+00 1132.1 925 67.2
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 0.0e+00 1108.2 929 65.7
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1076.2 930 64.5
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.3e-287 992.3 934 60.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.1e-286 989.9 939 58.5
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 2.9e-282 975.3 937 57.7
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-281 973.4 936 58.2
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 9.6e-278 960.3 926 57.7
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 3.1e-276 955.3 927 56.7
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 4.5e-275 951.4 921 56.4
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 3.8e-274 948.3 936 56.7
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.3e-270 935.3 936 56.5
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.4e-268 929.9 932 56.1
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 5.3e-268 927.9 912 55.2
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 5.3e-268 927.9 927 56.1
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.1e-265 920.2 922 55.1
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.2e-264 916.8 925 54.8
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.0e-263 913.7 926 54.4
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.0e-263 912.1 911 56.0
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 6.3e-261 904.4 930 53.8
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 3.2e-257 892.1 921 54.0
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.0e-255 885.6 926 53.6
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 3.9e-255 885.2 934 53.2
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.6e-254 882.5 917 54.3
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 4.4e-254 881.7 925 53.5
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.7e-253 879.8 803 59.8
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 6.3e-253 877.9 940 54.3
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 3.1e-252 875.5 899 54.6
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.1e-249 867.1 934 53.9
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.0e-247 859.0 996 50.5
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.5e-246 856.7 922 53.0
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.5e-246 856.7 921 53.0
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.8e-242 842.0 859 54.1
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.5e-238 830.1 922 49.3
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 2.2e-237 826.2 922 49.2
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.8e-236 823.2 863 54.7
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.1e-236 822.4 913 49.9
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 4.1e-236 822.0 921 50.9
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 7.0e-236 821.2 916 49.8
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.0e-235 819.7 931 50.5
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.7e-235 819.3 921 49.8
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 4.5e-235 818.5 921 49.9
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.1e-233 813.9 930 50.3
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.1e-233 813.9 930 50.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 6.8e-231 804.7 939 50.6
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.3e-229 800.4 930 49.9
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 9.2e-228 794.3 906 51.0
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 1.7e-226 790.0 926 49.1
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.7e-226 790.0 908 50.8
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 7.3e-225 784.6 911 48.3
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 2.3e-223 779.6 918 47.4
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 2.2e-221 773.1 901 48.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 9.2e-220 767.7 626 65.0
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.5e-219 765.8 906 48.1
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 5.6e-217 758.4 927 45.8
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.6e-216 756.9 917 46.9
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 1.2e-214 750.7 910 47.4
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 4.4e-214 748.8 909 47.1
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.4e-212 743.8 919 47.1
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.1e-212 742.3 927 47.2
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 5.4e-212 741.9 880 48.0
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 8.6e-210 734.6 920 46.8
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.9e-209 733.4 901 46.8
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 3.3e-209 732.6 627 63.0
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 4.3e-209 732.3 1053 44.1
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 6.2e-208 728.4 915 46.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.3e-202 710.7 881 47.0
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.3e-202 709.9 878 47.9
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 5.2e-199 698.7 640 60.0
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 1.5e-198 697.2 907 45.5
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 2.0e-198 696.8 741 52.9
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.6e-198 696.4 1168 39.5
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 3.4e-198 696.0 931 45.2
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.4e-196 689.9 928 47.6
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 9.2e-196 688.0 872 47.2
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-195 687.2 850 47.4
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 5.2e-191 672.2 497 69.0
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 7.6e-190 668.3 830 47.3
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 9.3e-188 661.4 931 43.8
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.5e-185 653.3 928 44.0
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 7.3e-185 651.7 931 43.9
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-180 637.9 564 61.5
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.8e-178 630.6 757 47.4
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 9.9e-174 614.8 872 44.7
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 2.3e-170 603.6 908 41.2
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.1e-169 601.3 924 42.0
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.6e-168 597.4 635 53.5
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 3.4e-166 589.7 414 74.4
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.3e-165 587.8 920 39.9
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 4.9e-165 585.9 881 41.7
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.8e-162 577.4 747 46.5
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-161 574.3 452 66.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.2e-158 564.7 625 50.9
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.3e-154 551.2 483 60.2
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.4e-127 461.5 487 55.9
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.5e-124 451.4 487 56.7
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 9.4e-124 448.7 908 36.1
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 2.0e-118 431.0 955 32.4
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 7.7e-118 429.1 458 53.9
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.0e-109 402.1 441 51.0
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-107 393.7 362 58.3
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-104 385.2 338 60.7
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.2e-104 384.4 474 48.1
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.2e-104 384.4 894 31.5
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-103 381.7 255 74.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 2.3e-101 374.4 396 54.0
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 5.4e-95 353.2 222 74.8
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 5.4e-95 353.2 222 74.8
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 2.3e-90 337.8 481 40.3
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 5.4e-87 326.6 280 63.9
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.7e-86 324.3 302 56.6
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.4e-79 300.1 412 45.6
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 3.6e-75 287.3 509 35.4
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 8.1e-75 286.2 461 41.6
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-70 272.3 578 36.2
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.6e-67 260.8 237 60.3
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 6.2e-67 260.0 469 38.0
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 7.6e-65 253.1 546 31.7
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 4.6e-62 243.8 399 41.1
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.7e-59 234.2 334 41.9
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.7e-59 234.2 237 53.6
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 8.7e-53 213.0 427 31.9
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-52 212.2 823 26.4
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.1e-47 196.1 240 49.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 7.1e-47 193.4 359 33.7
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.5e-41 175.6 460 27.2
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.6e-41 174.9 325 37.5
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 2.2e-40 171.8 195 49.7
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 6.1e-38 163.7 137 54.0
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.4e-36 156.8 246 37.8
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.7e-28 129.8 178 45.5
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 9.7e-28 129.8 178 45.5
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.3e-27 129.4 133 51.1
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-25 122.5 157 48.4
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 4.5e-25 120.9 157 47.8
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.9e-23 115.5 78 73.1
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.2e-23 114.4 113 54.9
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.1e-22 110.5 198 35.9
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 6.1e-22 110.5 161 47.8
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.4e-21 109.4 193 34.2
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.8e-18 99.0 110 43.6
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.7e-17 93.6 197 33.5
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-16 91.3 173 35.8
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-14 86.3 64 64.1
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.6e-14 85.9 704 20.7
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 8.8e-13 80.1 77 53.2
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 7.5e-12 77.0 63 54.0
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.8e-11 75.1 180 35.0
CARHR154530 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.1e-10 70.1 59 57.6
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.1e-10 70.1 45 68.9
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-09 67.4 88 42.0
C04p45760 Brassica napus HOM05D004183 ORTHO05D005022 7.7e-09 67.0 88 38.6
BolC4t26161H Brassica oleracea HOM05D004183 ORTHO05D005022 3.8e-08 64.7 88 37.5
BcaB06g27300 Brassica carinata HOM05D004183 ORTHO05D005022 8.5e-08 63.5 76 38.2


User provided reference genes

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