Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 6.6e-240 833.6 403 100.0
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 7.4e-223 776.9 389 97.2
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 7.1e-218 760.4 420 89.8
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 1.6e-217 759.2 419 89.5
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.9e-195 685.3 404 85.4
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 1.8e-184 649.4 403 77.9
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 2.0e-180 636.0 409 75.3
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 7.7e-180 634.0 403 79.4
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 7.2e-178 627.5 404 74.5
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 5.9e-172 607.8 408 71.3
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 5.0e-171 604.7 363 76.3
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 2.5e-170 602.4 405 71.9
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 2.7e-169 599.0 417 71.7
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 8.0e-169 597.4 412 72.1
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 8.8e-168 594.0 401 71.6
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 2.4e-165 585.9 404 71.5
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 2.2e-163 579.3 411 68.9
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 8.0e-161 570.9 368 74.2
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 4.7e-153 545.0 358 71.2
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 7.5e-151 537.7 366 68.3
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 4.1e-149 531.9 411 64.5
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 2.0e-148 529.6 345 71.6
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 2.0e-148 529.6 417 63.3
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 3.5e-148 528.9 364 67.3
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.9e-148 528.1 381 66.4
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 1.3e-147 526.9 411 62.8
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 6.6e-147 524.6 366 65.6
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.1e-146 523.9 372 64.8
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.1e-146 523.9 372 64.8
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 5.6e-146 521.5 415 63.1
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 7.3e-146 521.2 365 67.1
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 7.3e-146 521.2 366 65.8
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 7.3e-146 521.2 413 63.2
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 2.8e-145 519.2 366 68.0
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 2.8e-145 519.2 413 62.7
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 4.7e-145 518.5 400 62.0
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 6.2e-145 518.1 416 63.5
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 8.0e-145 517.7 367 66.5
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 8.9e-144 514.2 365 66.0
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 2.0e-143 513.1 364 65.9
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 8.3e-142 507.7 366 66.4
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 1.4e-141 506.9 414 61.8
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.9e-141 506.5 382 61.5
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 5.4e-141 505.0 363 66.7
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 5.4e-141 505.0 364 64.0
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 1.2e-140 503.8 360 64.7
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 2.3e-139 499.6 424 57.8
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 8.6e-139 497.7 361 64.5
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.5e-138 496.9 418 58.6
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.5e-138 496.9 367 61.9
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 5.6e-138 495.0 386 60.1
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 9.5e-138 494.2 367 61.6
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 3.6e-137 492.3 383 60.3
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 6.2e-137 491.5 364 61.0
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 6.2e-137 491.5 410 60.2
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.1e-136 490.7 361 63.7
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 1.4e-136 490.3 360 63.3
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 4.0e-136 488.8 385 60.5
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 4.0e-136 488.8 368 61.1
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 5.2e-136 488.4 411 59.9
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 5.2e-136 488.4 360 63.3
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 6.8e-136 488.0 396 57.1
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 8.9e-136 487.6 345 65.5
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 2.0e-135 486.5 409 60.1
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 5.8e-135 485.0 364 62.4
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 3.7e-134 482.3 398 58.8
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 1.1e-133 480.7 397 57.2
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 1.4e-133 480.3 364 62.1
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 3.2e-133 479.2 385 58.4
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 5.4e-133 478.4 368 59.5
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 7.1e-133 478.0 364 63.2
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 9.2e-133 477.6 364 61.8
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 2.7e-132 476.1 335 66.0
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 6.0e-132 474.9 419 56.3
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 1.0e-131 474.2 363 60.9
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.3e-131 473.8 365 63.0
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 3.9e-131 472.2 420 59.0
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 8.6e-131 471.1 368 59.2
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 8.6e-131 471.1 420 59.3
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 1.2e-129 467.2 367 59.7
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 3.6e-129 465.7 394 56.1
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 3.1e-128 462.6 369 57.7
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 4.0e-128 462.2 363 60.6
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 1.2e-127 460.7 339 61.7
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 1.5e-127 460.3 368 58.2
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 3.4e-127 459.1 366 58.5
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 4.4e-127 458.8 363 61.2
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 7.6e-127 458.0 401 56.1
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 9.2e-125 451.1 417 56.6
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 1.2e-124 450.7 362 58.6
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 4.6e-124 448.7 359 58.5
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 5.8e-119 431.8 362 55.2
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 3.8e-118 429.1 368 55.2
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 3.9e-115 419.1 367 56.9
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 5.1e-115 418.7 367 56.1
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 6.6e-115 418.3 391 53.7
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 2.1e-113 413.3 315 59.4
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 2.8e-113 412.9 315 59.4
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 8.1e-113 411.4 424 53.1
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.4e-112 410.6 364 53.8
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 9.9e-111 404.4 392 52.8
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 1.6e-108 397.1 398 50.8
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 7.9e-108 394.8 370 53.8
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 5.3e-104 382.1 364 52.7
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 1.0e-99 367.9 366 50.3
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.9e-99 365.9 269 63.2
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 4.8e-97 359.0 364 50.5
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 4.0e-96 355.9 276 59.8
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 1.5e-95 354.0 276 59.4
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 1.8e-91 340.5 382 45.5
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 7.4e-90 335.1 405 48.4
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 1.4e-88 330.9 332 50.9
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 2.9e-86 323.2 348 48.3
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 2.7e-84 316.6 419 41.3
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 7.9e-84 315.1 382 45.5
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.3e-83 314.3 362 45.9
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.9e-82 310.5 298 55.4
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.3e-81 307.8 407 41.5
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 6.3e-81 305.4 474 39.9
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 3.2e-77 293.1 292 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 1.1e-72 278.1 350 40.6
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 1.2e-68 264.6 347 45.2
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 8.0e-68 261.9 191 64.9
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 7.2e-61 238.8 416 35.3
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 2.1e-60 237.3 132 80.3
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 4.5e-55 219.5 158 65.2
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 2.2e-54 217.2 123 82.1
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 1.2e-52 211.5 206 51.9
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.3e-49 201.4 153 62.7
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 1.2e-47 194.9 145 66.9
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 3.0e-43 180.3 182 47.3
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 8.6e-38 162.2 433 28.9
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 2.3e-35 154.1 104 68.3
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 3.0e-35 153.7 121 55.4
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 8.9e-35 152.1 103 63.1
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 1.1e-32 145.2 386 29.8
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 3.5e-31 140.2 89 68.5
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 6.0e-31 139.4 352 33.0
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 1.3e-30 138.3 153 44.4
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 8.6e-30 135.6 96 71.9
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 1.2e-28 131.7 81 66.7
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 1.8e-27 127.9 77 74.0
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 1.8e-27 127.9 160 41.2
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 3.9e-22 110.2 103 50.5
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.7e-15 87.4 216 30.6
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 6.0e-15 86.3 54 74.1
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 7.8e-15 85.9 53 71.7
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 5.2e-11 73.2 346 23.4
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 8.9e-11 72.4 42 64.3
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.5e-10 71.6 351 23.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 2.0e-10 71.2 346 24.0
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 2.6e-10 70.9 32 84.4
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 2.6e-10 70.9 368 25.0
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 7.6e-10 69.3 361 21.9
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 7.6e-10 69.3 347 24.2
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 9.9e-10 68.9 346 23.1
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 2.9e-09 67.4 357 23.0
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 6.4e-09 66.2 356 23.6
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 1.1e-08 65.5 347 24.5
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 2.4e-08 64.3 386 22.8
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 3.2e-08 63.9 363 23.7
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 3.2e-08 63.9 371 22.9
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 4.1e-08 63.5 39 66.7
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 4.1e-08 63.5 352 24.4
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 1.2e-07 62.0 389 21.6
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 1.6e-07 61.6 377 25.2
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.6e-07 61.6 350 23.1
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 2.1e-07 61.2 350 23.1
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 3.5e-07 60.5 348 21.3
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 3.5e-07 60.5 98 36.7
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 6.0e-07 59.7 51 47.1
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 6.0e-07 59.7 355 24.5
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 7.8e-07 59.3 350 22.9
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 7.8e-07 59.3 363 23.4
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 7.8e-07 59.3 362 24.0
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 1.3e-06 58.5 348 22.4
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 1.7e-06 58.2 372 24.5
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 1.7e-06 58.2 343 23.3
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 1.7e-06 58.2 354 22.9
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.3e-06 57.8 350 22.9
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 2.3e-06 57.8 356 22.2
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 3.9e-06 57.0 384 25.5
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 5.1e-06 56.6 350 23.7
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 6.6e-06 56.2 358 21.8
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 8.7e-06 55.8 354 22.6
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 8.7e-06 55.8 343 22.2


User provided reference genes

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