Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 1.5e-38 162.2 69 100.0
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 1.5e-38 162.2 69 100.0
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 1.5e-38 162.2 69 100.0
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 1.5e-38 162.2 69 100.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 4.9e-34 147.1 68 88.2
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 6.4e-34 146.7 65 90.8
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 5.4e-33 143.7 70 85.7
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 7.1e-33 143.3 65 89.2
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 9.2e-33 142.9 68 85.3
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.2e-32 142.5 65 87.7
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.2e-32 142.5 69 85.5
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 1.2e-32 142.5 62 91.9
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.6e-32 142.1 68 86.8
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.6e-32 142.1 67 86.6
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.1e-32 141.7 65 87.7
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 2.1e-32 141.7 65 86.2
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 3.5e-32 141.0 66 87.9
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 6.0e-32 140.2 66 89.4
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 7.8e-32 139.8 64 90.6
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 7.8e-32 139.8 67 85.1
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 1.3e-31 139.0 66 89.4
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.7e-31 138.7 69 82.6
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 2.3e-31 138.3 69 82.6
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 2.3e-31 138.3 67 83.6
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.3e-31 138.3 69 82.6
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.3e-31 138.3 69 82.6
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.3e-31 138.3 69 81.2
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 2.3e-31 138.3 67 83.6
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 3.0e-31 137.9 65 86.2
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.9e-31 137.5 67 83.6
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.6e-31 136.7 67 83.6
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 6.6e-31 136.7 67 83.6
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 6.6e-31 136.7 68 79.4
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 8.6e-31 136.3 67 82.1
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.1e-30 136.0 68 83.8
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.5e-30 135.6 69 78.3
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 1.9e-30 135.2 67 79.1
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.9e-30 135.2 71 84.5
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.9e-30 135.2 67 82.1
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 2.5e-30 134.8 68 79.4
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 2.5e-30 134.8 68 79.4
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 3.3e-30 134.4 68 80.9
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 4.3e-30 134.0 65 84.6
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 7.3e-30 133.3 66 83.3
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 9.5e-30 132.9 67 79.1
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 1.6e-29 132.1 64 82.8
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 1.6e-29 132.1 68 82.4
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 1.6e-29 132.1 64 82.8
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 2.8e-29 131.3 67 77.6
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 3.6e-29 131.0 64 84.4
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 4.7e-29 130.6 68 79.4
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 6.2e-29 130.2 60 83.3
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 8.1e-29 129.8 65 78.5
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 8.1e-29 129.8 65 78.5
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 8.1e-29 129.8 65 78.5
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 8.1e-29 129.8 65 78.5
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 8.1e-29 129.8 65 78.5
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.1e-28 129.4 64 81.2
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 1.1e-28 129.4 69 78.3
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.1e-28 129.4 66 77.3
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 1.4e-28 129.0 61 83.6
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.8e-28 128.6 67 74.6
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.8e-28 128.6 67 74.6
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.8e-28 128.6 69 78.3
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 1.8e-28 128.6 61 80.3
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 3.1e-28 127.9 67 74.6
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 3.1e-28 127.9 69 79.7
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 3.1e-28 127.9 61 80.3
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 4.0e-28 127.5 69 76.8
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 4.0e-28 127.5 69 76.8
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 4.0e-28 127.5 69 76.8
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 5.2e-28 127.1 65 76.9
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 5.2e-28 127.1 63 82.5
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 5.2e-28 127.1 62 79.0
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 6.8e-28 126.7 69 76.8
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 6.8e-28 126.7 69 78.3
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 8.9e-28 126.3 63 81.0
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 2.6e-27 124.8 69 75.4
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 3.4e-27 124.4 66 75.8
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 5.8e-27 123.6 58 82.8
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 9.9e-27 122.9 60 76.7
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 9.9e-27 122.9 61 85.2
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 2.9e-26 121.3 63 77.8
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 1.4e-25 119.0 68 75.0
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.9e-25 118.6 61 75.4
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.9e-25 118.6 61 75.4
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.9e-25 118.6 61 75.4
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.4e-25 118.2 59 76.3
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 9.2e-25 116.3 65 70.8
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 9.2e-25 116.3 62 75.8
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 1.6e-24 115.5 54 83.3
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 2.7e-24 114.8 61 82.0
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 2.7e-24 114.8 61 82.0
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 2.3e-23 111.7 72 70.8
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.5e-22 109.0 50 88.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.5e-22 109.0 51 86.3
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 3.3e-22 107.8 51 88.2
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 3.3e-22 107.8 50 88.0
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 4.3e-22 107.5 79 55.7
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 4.3e-22 107.5 61 77.0
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 5.6e-22 107.1 50 86.0
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 7.3e-22 106.7 62 79.0
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 5.2e-20 100.5 66 62.1
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.4e-19 97.8 66 62.1
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.3e-18 95.9 66 59.1
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.7e-18 95.5 51 76.5
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 2.2e-18 95.1 51 74.5
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.9e-18 94.7 48 75.0
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.1e-17 92.8 53 75.5
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.9e-17 92.0 59 59.3
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 1.9e-17 92.0 53 75.5
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 1.6e-16 89.0 50 74.0
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 3.9e-15 84.3 52 75.0
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 5.3e-12 73.9 51 62.7
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 6.9e-12 73.6 34 85.3
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 6.9e-12 73.6 34 85.3
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 3.4e-11 71.2 38 81.6
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 9.9e-11 69.7 33 84.8
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 1.7e-10 68.9 34 82.4
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.2e-10 68.6 36 75.0
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.2e-10 68.6 36 75.0
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.8e-10 67.8 36 75.0
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 4.9e-10 67.4 37 73.0
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 6.4e-10 67.0 36 75.0
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 8.4e-10 66.6 41 63.4
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 1.2e-08 62.8 32 75.0
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.1e-08 62.0 33 63.6
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 1.5e-06 55.8 50 46.0


User provided reference genes

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