Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 2.9e-30 134.4 62 100.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.4e-19 99.0 56 80.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 4.0e-19 97.4 56 78.6
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 9.8e-18 92.8 56 76.8
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 7.0e-16 86.7 60 70.0
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.4e-11 72.4 49 63.3
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 5.2e-11 70.5 49 61.2
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 5.2e-11 70.5 49 61.2
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 8.9e-11 69.7 49 59.2
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.2e-10 69.3 49 59.2
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.2e-10 69.3 49 59.2
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 1.5e-10 68.9 47 61.7
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.5e-10 68.9 47 61.7
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.6e-10 68.2 49 59.2
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 3.4e-10 67.8 49 59.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 3.4e-10 67.8 49 59.2
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 4.4e-10 67.4 47 61.7
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 7.5e-10 66.6 47 57.4
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 7.5e-10 66.6 47 57.4
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 7.5e-10 66.6 47 59.6
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 9.8e-10 66.2 48 54.2
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 9.8e-10 66.2 49 57.1
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 9.8e-10 66.2 47 59.6
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 9.8e-10 66.2 47 59.6
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.3e-09 65.9 47 61.7
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.3e-09 65.9 47 59.6
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.7e-09 65.5 49 57.1
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.7e-09 65.5 47 57.4
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.2e-09 65.1 47 57.4
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.2e-09 65.1 47 57.4
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 2.9e-09 64.7 47 59.6
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.9e-09 64.7 49 53.1
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 3.7e-09 64.3 42 59.5
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.7e-09 64.3 48 56.2
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 3.7e-09 64.3 47 59.6
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 4.9e-09 63.9 47 55.3
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 4.9e-09 63.9 47 55.3
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 6.4e-09 63.5 47 57.4
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 6.4e-09 63.5 41 65.9
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 6.4e-09 63.5 47 55.3
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 6.4e-09 63.5 47 59.6
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.4e-09 63.5 47 59.6
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 8.3e-09 63.2 47 55.3
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 8.3e-09 63.2 47 55.3
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 8.3e-09 63.2 47 57.4
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 8.3e-09 63.2 47 55.3
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 8.3e-09 63.2 47 57.4
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 8.3e-09 63.2 47 55.3
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.1e-08 62.8 47 55.3
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.1e-08 62.8 49 55.1
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.1e-08 62.8 49 55.1
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.4e-08 62.4 47 53.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.4e-08 62.4 47 53.2
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 1.4e-08 62.4 47 53.2
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 1.4e-08 62.4 47 53.2
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.4e-08 62.4 47 53.2
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.9e-08 62.0 47 57.4
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.4e-08 61.6 48 56.2
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.4e-08 61.6 47 55.3
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 51.1
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 51.1
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 51.1
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 53.2
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 53.2
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 53.2
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 3.2e-08 61.2 47 55.3
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 4.1e-08 60.8 47 51.1
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 4.1e-08 60.8 47 53.2
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 4.1e-08 60.8 47 53.2
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 4.1e-08 60.8 47 55.3
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 4.1e-08 60.8 47 51.1
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 4.1e-08 60.8 47 55.3
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 5.4e-08 60.5 47 55.3
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 5.4e-08 60.5 47 55.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 5.4e-08 60.5 42 57.1
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.4e-08 60.5 47 53.2
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 5.4e-08 60.5 47 53.2
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 5.4e-08 60.5 47 53.2
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 5.4e-08 60.5 45 55.6
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 9.2e-08 59.7 47 51.1
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 9.2e-08 59.7 47 51.1
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 9.2e-08 59.7 47 53.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 9.2e-08 59.7 45 55.6
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.2e-07 59.3 50 48.0
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 1.2e-07 59.3 42 57.1
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.2e-07 59.3 47 53.2
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.2e-07 59.3 48 60.4
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.6e-07 58.9 47 51.1
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.6e-07 58.9 42 57.1
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.6e-07 58.9 47 48.9
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.6e-07 58.9 47 57.4
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.1e-07 58.5 47 53.2
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.1e-07 58.5 47 48.9
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.7e-07 58.2 47 48.9
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 2.7e-07 58.2 47 51.1
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.7e-07 58.2 47 51.1
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 4.6e-07 57.4 50 52.0
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 4.6e-07 57.4 46 52.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 7.8e-07 56.6 47 48.9
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.0e-06 56.2 48 43.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.3e-06 55.8 37 62.2
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.3e-06 55.8 47 48.9
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 2.3e-06 55.1 47 51.1


User provided reference genes

Program Settings