Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 8.0e-191 670.2 332 100.0
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 6.8e-190 667.2 332 99.4
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 5.1e-137 491.5 317 79.2
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.1e-134 483.8 335 75.8
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 2.4e-131 472.6 335 73.1
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 9.3e-123 444.1 337 70.3
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 4.6e-122 441.8 300 76.7
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 1.0e-113 414.1 331 64.7
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 1.8e-113 413.3 293 70.3
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 1.6e-111 406.8 295 67.5
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 3.7e-111 405.6 307 66.8
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 8.2e-111 404.4 294 67.0
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 2.4e-110 402.9 311 66.2
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 2.4e-110 402.9 322 64.6
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 4.1e-110 402.1 295 68.5
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 1.3e-108 397.1 296 66.9
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 1.7e-108 396.7 296 66.2
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 5.0e-108 395.2 311 62.7
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 5.0e-108 395.2 308 63.6
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 6.5e-108 394.8 310 63.9
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 1.4e-107 393.7 289 66.4
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.9e-107 393.3 329 62.3
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 9.3e-107 391.0 308 63.0
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 9.3e-107 391.0 319 61.1
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 1.2e-106 390.6 320 62.8
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 2.7e-106 389.4 329 62.0
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 4.6e-106 388.7 286 65.0
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 4.6e-106 388.7 297 66.0
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 6.1e-106 388.3 295 66.4
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 1.0e-105 387.5 296 64.9
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 2.3e-105 386.3 317 63.4
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 1.1e-104 384.0 294 65.0
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 1.9e-104 383.3 323 60.4
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 2.5e-104 382.9 312 61.5
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 2.5e-104 382.9 312 61.5
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 2.5e-104 382.9 312 61.5
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 7.4e-104 381.3 287 66.6
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 9.7e-104 380.9 312 61.2
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 9.7e-104 380.9 315 61.0
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 1.3e-103 380.6 303 62.0
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 2.2e-103 379.8 299 62.5
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 2.8e-103 379.4 277 66.8
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 2.8e-103 379.4 324 61.1
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 2.8e-103 379.4 308 63.3
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 3.7e-103 379.0 303 62.0
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 3.7e-103 379.0 297 63.0
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 3.7e-103 379.0 308 63.3
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 4.8e-103 378.6 318 61.3
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 5.3e-102 375.2 324 60.2
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 6.9e-102 374.8 275 65.8
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 6.9e-102 374.8 281 65.5
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 4.5e-101 372.1 311 60.5
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 1.3e-100 370.5 282 63.8
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 2.2e-100 369.8 324 61.1
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 2.9e-100 369.4 280 65.0
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 3.8e-100 369.0 289 65.1
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 5.0e-100 368.6 293 62.5
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 5.0e-100 368.6 283 64.7
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 8.5e-100 367.9 305 59.0
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 9.4e-99 364.4 295 62.4
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 2.1e-98 363.2 279 62.4
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 3.0e-97 359.4 336 56.8
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 2.0e-96 356.7 310 58.7
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 3.3e-96 355.9 275 62.2
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 4.4e-96 355.5 324 62.0
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 4.4e-96 355.5 288 61.1
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.7e-95 353.6 287 61.0
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 3.7e-95 352.4 304 58.6
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 4.8e-95 352.1 301 58.8
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 8.2e-95 351.3 290 62.1
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 3.1e-94 349.4 280 63.2
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 6.9e-94 348.2 280 63.2
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 1.5e-93 347.1 306 55.6
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.2e-90 337.4 317 53.0
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.6e-90 337.0 287 55.7
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 2.1e-90 336.7 281 59.4
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 5.2e-89 332.0 250 70.4
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 4.8e-87 325.5 277 58.5
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 1.8e-86 323.6 321 52.3
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 5.3e-86 322.0 298 54.0
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 1.2e-85 320.9 258 60.1
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 2.2e-84 316.6 306 52.3
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 1.9e-83 313.5 318 52.5
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 4.2e-83 312.4 294 56.5
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 4.7e-82 308.9 303 51.5
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.0e-82 308.1 304 53.6
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 3.3e-80 302.8 329 52.3
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 7.5e-80 301.6 233 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 1.3e-79 300.8 283 54.1
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 1.3e-76 290.8 277 56.0
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 5.0e-76 288.9 277 59.9
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 2.5e-75 286.6 169 78.7
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.7e-74 283.1 236 62.7
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.4e-70 270.8 172 70.9
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 1.7e-68 263.8 287 49.1
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.2e-66 257.7 286 49.7
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 1.0e-65 254.6 243 55.1
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.3e-63 247.7 179 63.1
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.1e-62 244.6 248 54.8
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.9e-61 238.8 245 51.8
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 5.9e-61 238.8 195 61.5
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 4.3e-59 232.6 205 63.4
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 6.4e-55 218.8 144 70.1
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 6.8e-49 198.7 282 47.2
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 4.1e-46 189.5 108 87.0
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 1.0e-44 184.9 278 40.3
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.1e-38 164.9 141 54.6
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 2.4e-38 163.7 257 36.2
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 5.4e-30 136.0 74 86.5
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 2.1e-29 134.0 134 54.5
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 1.5e-27 127.9 142 50.0
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 5.3e-25 119.4 86 64.0
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.1e-21 107.5 88 62.5
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.7e-20 102.1 74 63.5
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.5e-19 101.3 81 66.7
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 1.6e-18 97.8 91 61.5
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 8.4e-15 85.5 55 72.7
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 2.4e-14 84.0 113 46.9
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 5.1e-12 76.3 68 54.4
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.5e-11 74.7 75 50.7
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 3.3e-11 73.6 78 53.8
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 7.4e-11 72.4 75 49.3
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 1.8e-09 67.8 64 50.0
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 2.4e-09 67.4 94 45.7
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 1.5e-08 64.7 73 52.1
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 1.7e-07 61.2 41 65.9
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 1.9e-06 57.8 46 65.2


User provided reference genes

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