Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4LJY9R Arachis hypogaea HOM05D004024 ORTHO05D004639 2.8e-88 328.6 164 100.0
arahy.Tifrunner.gnm1.ann1.AMB9RJ Arachis hypogaea HOM05D004024 ORTHO05D004639 1.5e-68 263.1 170 81.2
arahy.Tifrunner.gnm1.ann1.01HUHH Arachis hypogaea HOM05D004024 ORTHO05D004639 1.7e-48 196.4 149 69.8
arahy.Tifrunner.gnm1.ann1.NPZ9GD Arachis hypogaea HOM05D004024 ORTHO05D004639 2.2e-48 196.1 149 69.1
Ca_06362_v3 Cicer arietinum L. HOM05D004024 ORTHO05D004639 1.0e-42 177.2 149 63.8
LjContig00272g0016413 Lotus japonicus HOM05D004024 ORTHO05D004639 4.0e-42 175.3 149 62.4
Glyma.14G016900 Glycine max HOM05D004024 ORTHO05D004639 8.9e-42 174.1 148 63.5
ClCG10G004660 Citrullus lanatus HOM05D004024 ORTHO05D004639 3.4e-41 172.2 152 63.8
Glyma.02G296700 Glycine max HOM05D004024 ORTHO05D004639 3.4e-41 172.2 148 62.8
Lalb_Chr20g0116251 Lupinus albus HOM05D004024 ORTHO05D004639 4.4e-41 171.8 149 61.7
Phvul.008G274600 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 5.8e-41 171.4 150 62.0
Medtr5g094300 Medicago truncatula HOM05D004024 ORTHO05D004639 1.7e-40 169.9 149 61.1
TPR.G31724 Trifolium pratense HOM05D004024 ORTHO05D004639 3.7e-40 168.7 149 59.1
VMungo0647G2266 Vigna mungo HOM05D004024 ORTHO05D004639 4.9e-40 168.3 150 61.3
Sed0002582 Sechium edule HOM05D004024 ORTHO05D004639 2.0e-38 162.9 152 61.8
MELO3C014143.2 Cucumis melo HOM05D004024 ORTHO05D004639 1.3e-37 160.2 152 60.5
arahy.Tifrunner.gnm1.ann1.M3IDM0 Arachis hypogaea HOM05D004024 ORTHO05D004639 1.7e-37 159.8 149 58.4
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 1.7e-37 159.8 138 61.6
Haze_09776 Corylus avellana HOM05D004024 ORTHO05D004639 5.0e-37 158.3 141 65.2
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 1.9e-36 156.4 149 55.7
Gohir.A13G135400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 1.2e-35 153.7 149 57.7
Gohir.D13G139900 Gossypium hirsutum HOM05D004024 ORTHO05D004639 1.2e-35 153.7 149 57.7
Gorai.013G156500 Gossypium raimondii HOM05D004024 ORTHO05D004639 1.2e-35 153.7 149 57.7
CiPaw.11G199900 Carya illinoinensis HOM05D004024 ORTHO05D004639 1.6e-35 153.3 143 62.2
Sabra16G0237800 Salix brachista HOM05D004024 ORTHO05D004639 2.1e-35 152.9 141 61.7
CsaV3_3G004470 Cucumis sativus L. HOM05D004024 ORTHO05D004639 2.8e-35 152.5 152 57.9
Gohir.A01G086400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 3.6e-35 152.1 149 57.0
PGR083G0593 Punica granatum HOM05D004024 ORTHO05D004639 3.6e-35 152.1 139 61.2
Gorai.002G095600 Gossypium raimondii HOM05D004024 ORTHO05D004639 8.0e-35 151.0 149 56.4
Potri.001G360300 Populus trichocarpa HOM05D004024 ORTHO05D004639 8.0e-35 151.0 141 59.6
Cfa020239 Carpinus fangiana HOM05D004024 ORTHO05D004639 1.1e-34 150.6 140 62.9
MD03G1189900 Malus domestica HOM05D004024 ORTHO05D004639 1.1e-34 150.6 151 58.9
MD11G1206200 Malus domestica HOM05D004024 ORTHO05D004639 1.1e-34 150.6 151 58.3
arahy.Tifrunner.gnm1.ann1.IM9LRW Arachis hypogaea HOM05D004024 ORTHO05D004639 2.3e-34 149.4 175 50.9
Gohir.D01G072600 Gossypium hirsutum HOM05D004024 ORTHO05D004639 2.3e-34 149.4 149 55.7
CSS0039941 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 3.1e-34 149.1 146 56.8
Eucgr.F03519 Eucalyptus grandis HOM05D004024 ORTHO05D004639 3.1e-34 149.1 147 55.1
Prupe.4G231300 Prunus persica HOM05D004024 ORTHO05D004639 5.2e-34 148.3 139 63.3
CSS0029510 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 6.8e-34 147.9 138 60.1
Potri.011G088500 Populus trichocarpa HOM05D004024 ORTHO05D004639 8.9e-34 147.5 150 56.0
Thecc.07G023700 Theobroma cacao HOM05D004024 ORTHO05D004639 1.2e-33 147.1 149 57.0
CANSAT11G0326 Cannabis sativa HOM05D004024 ORTHO05D004639 2.0e-33 146.4 150 56.7
SalBow8G0703 Salvia bowleyana HOM05D004024 ORTHO05D004639 2.6e-33 146.0 140 59.3
SalBow8G4424 Salvia bowleyana HOM05D004024 ORTHO05D004639 5.8e-33 144.8 140 59.3
Hma1.2p1_0036F.1_g022840 Hydrangea macrophylla HOM05D004024 ORTHO05D004639 1.3e-32 143.7 150 56.0
Cc05_g14570 Coffea canephora HOM05D004024 ORTHO05D004639 2.2e-32 142.9 138 58.0
Manes.03G134000 Manihot esculenta HOM05D004024 ORTHO05D004639 3.7e-32 142.1 154 55.2
Dinv40827 Davidia involucrata HOM05D004024 ORTHO05D004639 4.9e-32 141.7 152 54.6
Nitab4.5_0008232g0030 Nicotiana tabacum HOM05D004024 ORTHO05D004639 4.9e-32 141.7 147 53.7
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 4.9e-32 141.7 138 58.7
Actinidia39078 Actinidia chinensis HOM05D004024 ORTHO05D004639 6.4e-32 141.4 140 55.7
Duzib268G0935 Durio zibethinus HOM05D004024 ORTHO05D004639 6.4e-32 141.4 149 57.0
GSVIVG01037765001 Vitis vinifera HOM05D004024 ORTHO05D004639 6.4e-32 141.4 149 53.0
Gorai.007G311300 Gossypium raimondii HOM05D004024 ORTHO05D004639 1.1e-31 140.6 150 54.0
Migut.H01776 Erythranthe guttata HOM05D004024 ORTHO05D004639 1.4e-31 140.2 140 55.7
FAN16G1414 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.4e-31 140.2 149 55.7
TWI38G2360 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 1.4e-31 140.2 140 57.1
TWI39G0215 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 1.4e-31 140.2 139 57.6
TAR626G0012 Trochodendron aralioides HOM05D004024 ORTHO05D004639 1.9e-31 139.8 150 54.7
CAN.G337.35 Capsicum annuum HOM05D004024 ORTHO05D004639 2.4e-31 139.4 149 52.3
Manes.15G064200 Manihot esculenta HOM05D004024 ORTHO05D004639 2.4e-31 139.4 150 55.3
Oeu054320.1 Olea europaea HOM05D004024 ORTHO05D004639 2.4e-31 139.4 148 54.7
Sopen07g033420 Solanum pennellii HOM05D004024 ORTHO05D004639 2.4e-31 139.4 149 52.3
PGSC0003DMG401022191 Solanum tuberosum HOM05D004024 ORTHO05D004639 2.4e-31 139.4 149 53.0
Actinidia35382 Actinidia chinensis HOM05D004024 ORTHO05D004639 3.2e-31 139.0 143 55.9
Peaxi162Scf00285g00929 Petunia axillaris HOM05D004024 ORTHO05D004639 3.2e-31 139.0 140 57.1
FAN25G0894 Fragaria x ananassa HOM05D004024 ORTHO05D004639 4.1e-31 138.7 162 50.6
Solyc07g065200.3 Solanum lycopersicum HOM05D004024 ORTHO05D004639 4.1e-31 138.7 149 52.3
Lj8A175G77 Lonicera japonica HOM05D004024 ORTHO05D004639 5.4e-31 138.3 138 56.5
QL08p008635 Quercus lobata HOM05D004024 ORTHO05D004639 5.4e-31 138.3 152 53.3
COL.COLO4_09773 Corchorus olitorius HOM05D004024 ORTHO05D004639 7.0e-31 137.9 149 53.0
Aa31LG3G11450 Aethionema arabicum HOM05D004024 ORTHO05D004639 9.2e-31 137.5 144 54.9
MSTRG.6976 Avicennia marina HOM05D004024 ORTHO05D004639 1.2e-30 137.1 141 59.6
Nitab4.5_0001160g0210 Nicotiana tabacum HOM05D004024 ORTHO05D004639 1.2e-30 137.1 147 53.7
Lsat_1_v5_gn_5_3461 Lactuca sativa HOM05D004024 ORTHO05D004639 2.1e-30 136.3 149 53.0
SGA_v2.0_scaffold8G04376 Striga asiatica HOM05D004024 ORTHO05D004639 2.1e-30 136.3 140 55.7
AL7G26210 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 2.7e-30 136.0 142 54.2
Oeu034550.1 Olea europaea HOM05D004024 ORTHO05D004639 2.7e-30 136.0 138 58.7
THA.LOC104811646 Tarenaya hassleriana HOM05D004024 ORTHO05D004639 2.7e-30 136.0 140 55.0
RcHm_v2.0_Chr5g0042411 Rosa chinensis HOM05D004024 ORTHO05D004639 3.5e-30 135.6 138 58.0
ECA246G1790 Erigeron canadensis HOM05D004024 ORTHO05D004639 6.0e-30 134.8 151 51.0
DCAR_013207 Daucus carota HOM05D001671 ORTHO05D004639 7.8e-30 134.4 137 54.0
Gohir.A11G277566 Gossypium hirsutum HOM05D004024 ORTHO05D004639 7.8e-30 134.4 141 54.6
BcaB03g12503 Brassica carinata HOM05D004024 ORTHO05D004639 1.0e-29 134.0 142 54.2
FAN11G0159 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.0e-29 134.0 151 53.6
Cpa.g.sc12.205 Carica papaya HOM05D004024 ORTHO05D004639 1.3e-29 133.7 149 50.3
HanXRQChr05g0159961 Helianthus annuus HOM05D004024 ORTHO05D004639 1.7e-29 133.3 148 50.7
Rhsim04G0015500 Rhododendron simsii HOM05D001671 ORTHO05D004639 1.7e-29 133.3 137 55.5
AT4G26670 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 2.3e-29 132.9 142 53.5
BraA03t10700Z Brassica rapa HOM05D004024 ORTHO05D004639 3.0e-29 132.5 138 54.3
Carub.0008s1586 Capsella rubella HOM05D004024 ORTHO05D004639 3.0e-29 132.5 143 53.8
CARHR234270 Cardamine hirsuta HOM05D004024 ORTHO05D004639 3.0e-29 132.5 142 52.8
CARHR268820 Cardamine hirsuta HOM05D004024 ORTHO05D004639 3.0e-29 132.5 144 53.5
Aqoxy1G04026 Aquilegia oxysepala HOM05D004024 ORTHO05D004639 3.9e-29 132.1 150 51.3
HPP92_014278 Vanilla planifolia HOM05D004024 ORTHO05D004639 3.9e-29 132.1 134 56.7
HPP92_024489 Vanilla planifolia HOM05D004024 ORTHO05D004639 3.9e-29 132.1 134 56.7
FAN21G2056 Fragaria x ananassa HOM05D004024 ORTHO05D004639 5.0e-29 131.7 138 56.5
BraA01t01747Z Brassica rapa HOM05D004024 ORTHO05D004639 8.6e-29 131.0 147 53.7
Atru.chr2.3628 Acer truncatum HOM05D004024 ORTHO05D004639 1.5e-28 130.2 142 51.4
BcaC09g50630 Brassica carinata HOM05D004024 ORTHO05D004639 1.5e-28 130.2 146 53.4
C01p22720 Brassica napus HOM05D004024 ORTHO05D004639 1.5e-28 130.2 146 53.4
BolC1t02201H Brassica oleracea HOM05D004024 ORTHO05D004639 1.5e-28 130.2 146 53.4
HanXRQChr11g0324641 Helianthus annuus HOM05D004024 ORTHO05D004639 1.5e-28 130.2 148 51.4
Sp6g17400 Schrenkiella parvula HOM05D004024 ORTHO05D004639 1.5e-28 130.2 141 54.6
Aa31LG5G12280 Aethionema arabicum HOM05D004024 ORTHO05D004639 1.9e-28 129.8 144 54.2
BcaC01g06372 Brassica carinata HOM05D004024 ORTHO05D004639 1.9e-28 129.8 138 52.9
BolC3t14065H Brassica oleracea HOM05D004024 ORTHO05D004639 1.9e-28 129.8 138 53.6
Carub.0007s1420 Capsella rubella HOM05D004024 ORTHO05D004639 1.9e-28 129.8 142 52.8
Migut.M01685 Erythranthe guttata HOM05D004024 ORTHO05D004639 1.9e-28 129.8 142 54.9
Sp7g24640 Schrenkiella parvula HOM05D004024 ORTHO05D004639 1.9e-28 129.8 146 53.4
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 3.3e-28 129.0 138 52.9
AT5G55510 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 5.6e-28 128.3 138 52.9
AL8G31060 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 7.3e-28 127.9 143 54.5
C03p16450 Brassica napus HOM05D004024 ORTHO05D004639 9.5e-28 127.5 138 52.2
CDE04G2600 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 9.5e-28 127.5 147 49.7
A10p12590 Brassica napus HOM05D004024 ORTHO05D004639 1.2e-27 127.1 139 49.6
Lj6g0021305 Lotus japonicus HOM05D004024 ORTHO05D004639 1.2e-27 127.1 143 51.0
BraA10t43363Z Brassica rapa HOM05D004024 ORTHO05D004639 1.6e-27 126.7 139 49.6
MBI16_g42313_MAGBIO Magnolia biondii HOM05D004024 ORTHO05D004639 1.6e-27 126.7 139 55.4
EL10Ac4g07627 Beta vulgaris HOM05D004024 ORTHO05D004639 2.1e-27 126.3 138 52.9
BcaB08g35907 Brassica carinata HOM05D004024 ORTHO05D001781 2.1e-27 126.3 140 49.3
C09p46180 Brassica napus HOM05D004024 ORTHO05D004639 2.8e-27 125.9 139 49.6
BolC9t57483H Brassica oleracea HOM05D004024 ORTHO05D004639 2.8e-27 125.9 139 49.6
FAN25G3281 Fragaria x ananassa HOM05D004024 ORTHO05D004639 2.8e-27 125.9 164 48.2
BcaC09g52251 Brassica carinata HOM05D004024 ORTHO05D004639 3.6e-27 125.6 148 51.4
Ciclev10009483m.g Citrus clementina HOM05D004024 ORTHO05D004639 3.6e-27 125.6 140 52.9
A01p17920 Brassica napus HOM05D004024 ORTHO05D004639 6.2e-27 124.8 147 53.1
CDE05G1543 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 6.2e-27 124.8 148 46.6
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 6.2e-27 124.8 148 45.3
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.4e-26 123.6 137 47.4
Sc07g0002950 Simmondsia chinensis HOM05D004024 ORTHO05D004639 2.3e-26 122.9 138 53.6
CDE02G1960 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 3.1e-26 122.5 150 44.7
Hund23145 Selenicereus undatus HOM05D004024 ORTHO05D004639 6.8e-26 121.3 138 50.7
MD00G1122600 Malus domestica HOM05D004024 ORTHO05D004639 8.9e-26 120.9 150 48.7
unitig_85.g27339 Utricularia gibba HOM05D004024 ORTHO05D004639 8.9e-26 120.9 149 48.3
DCAR_017098 Daucus carota HOM05D004024 ORTHO05D004639 1.2e-25 120.6 137 53.3
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 2.6e-25 119.4 152 48.0
Ah.06g181090 Amaranthus hybridus HOM05D004024 ORTHO05D004639 5.8e-25 118.2 147 46.9
Zm00001eb004090 Zea mays HOM05D004024 ORTHO05D004639 2.2e-24 116.3 147 46.3
VMungo1127G1392 Vigna mungo HOM05D004024 ORTHO05D004639 2.9e-24 115.9 129 51.9
AUR62015937 Chenopodium quinoa HOM05D004024 ORTHO05D004639 4.9e-24 115.2 138 50.0
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 8.3e-24 114.4 150 44.7
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 1.9e-23 113.2 148 44.6
AUR62040672 Chenopodium quinoa HOM05D004024 ORTHO05D004639 2.7e-22 109.4 138 48.6
Zm00001eb401140 Zea mays HOM05D004024 ORTHO05D004639 2.7e-22 109.4 126 50.0
Os12g0514900 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 6.0e-22 108.2 140 45.7
Actinidia05039 Actinidia chinensis HOM05D004024 ORTHO05D004639 7.8e-22 107.8 140 47.1
Glyma.18G087600 Glycine max HOM05D004024 ORTHO05D004639 1.3e-21 107.1 131 48.9
Glyma.18G086800 Glycine max HOM05D004024 ORTHO05D004639 1.7e-21 106.7 113 52.2
Zm00001eb264400 Zea mays HOM05D004024 ORTHO05D004639 1.7e-21 106.7 124 50.0
Os03g0194500 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 3.0e-21 105.9 126 50.8
Zm00001eb410970 Zea mays HOM05D004024 ORTHO05D004639 5.1e-21 105.1 126 50.0
SGA_v2.0_scaffold478G52230 Striga asiatica HOM05D004024 ORTHO05D004639 8.6e-21 104.4 95 60.0
Glyma.18G089100 Glycine max HOM05D004024 ORTHO05D004639 1.5e-20 103.6 113 50.4
Phvul.006G049300 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 2.5e-20 102.8 118 49.2
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 3.3e-20 102.4 138 42.8
Glyma.08G323000 Glycine max HOM05D004024 ORTHO05D004639 6.2e-19 98.2 110 50.0
MD05G1006500 Malus domestica HOM05D004024 ORTHO05D004639 3.1e-18 95.9 135 47.4
Zm00001eb027670 Zea mays HOM05D004024 ORTHO05D004639 3.1e-18 95.9 135 42.2
MD06G1020100 Malus domestica HOM05D004024 ORTHO05D004639 4.0e-18 95.5 92 60.9
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 9.9e-17 90.9 96 52.1
VMungo0540G1873 Vigna mungo HOM05D004024 ORTHO05D004639 1.3e-16 90.5 109 48.6
Pp3c23_11700 Physcomitrium patens HOM05D004024 ORTHO05D004639 4.9e-16 88.6 110 45.5
Pp3c24_12690 Physcomitrium patens HOM05D004024 ORTHO05D004639 4.9e-16 88.6 143 40.6
Mapoly0060s0085 Marchantia polymorpha HOM05D004024 ORTHO05D004639 7.1e-15 84.7 102 45.1
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 2.7e-14 82.8 129 41.1
SMO115G0139 Selaginella moellendorffii HOM05D004024 ORTHO05D004639 4.3e-12 75.5 108 38.9
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 3.6e-11 72.4 165 34.5
Hund01922 Selenicereus undatus HOM05D004024 ORTHO05D004639 3.6e-11 72.4 138 35.5
FvH4_3g23900 Fragaria vesca HOM05D004024 ORTHO05D004639 7.6e-09 64.7 72 52.8
Thhalv10026251m.g Eutrema salsugineum HOM05D004024 ORTHO05D004639 1.3e-08 63.9 77 49.4
Nn1g03268 Nelumbo nucifera HOM05D004024 ORTHO05D004639 1.7e-08 63.5 77 49.4
Nn1g07427 Nelumbo nucifera HOM05D004024 ORTHO05D004639 4.9e-08 62.0 72 48.6
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 1.1e-07 60.8 62 53.2


User provided reference genes

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