Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4K2B5E Arachis hypogaea HOM05D004450 ORTHO05D005491 7.3e-93 344.0 185 100.0
arahy.Tifrunner.gnm1.ann1.T35Q4E Arachis hypogaea HOM05D004450 ORTHO05D005491 6.5e-49 198.0 114 93.0
arahy.Tifrunner.gnm1.ann1.KN8WKR Arachis hypogaea HOM05D004450 ORTHO05D005491 8.5e-49 197.6 114 93.0
Ca_26313_v3 Cicer arietinum L. HOM05D004450 ORTHO05D005491 1.3e-33 147.1 115 71.3
Lalb_Chr23g0270731 Lupinus albus HOM05D004450 ORTHO05D005491 5.5e-32 141.7 114 69.3
Medtr3g073620 Medicago truncatula HOM05D004450 ORTHO05D005491 7.2e-32 141.4 115 69.6
Psat5g136520 Pisum sativum HOM05D004450 ORTHO05D005491 1.6e-31 140.2 115 67.8
TPR.G28951 Trifolium pratense HOM05D004450 ORTHO05D005491 2.1e-31 139.8 109 68.8
Lj1g0009455 Lotus japonicus HOM05D004450 ORTHO05D005491 6.1e-31 138.3 115 68.7
Lalb_Chr08g0241811 Lupinus albus HOM05D004450 ORTHO05D005491 6.1e-31 138.3 113 66.4
Glyma.06G106900 Glycine max HOM05D004450 ORTHO05D005491 2.6e-29 132.9 115 65.2
Glyma.04G107100 Glycine max HOM05D004450 ORTHO05D005491 1.7e-28 130.2 115 63.5
VMungo1309G1299 Vigna mungo HOM05D004450 ORTHO05D005491 8.2e-28 127.9 121 64.5
Phvul.009G027200 Phaseolus vulgaris HOM05D004450 ORTHO05D005491 1.8e-27 126.7 115 66.1
arahy.Tifrunner.gnm1.ann1.6AK6JC Arachis hypogaea HOM05D003351 ORTHO05D003806 5.9e-26 121.7 128 58.6
arahy.Tifrunner.gnm1.ann1.KB1I4I Arachis hypogaea HOM05D003351 ORTHO05D003806 2.9e-25 119.4 123 60.2
GSVIVG01008971001 Vitis vinifera HOM05D004450 ORTHO05D005491 5.5e-24 115.2 117 54.7
RcHm_v2.0_Chr7g0240181 Rosa chinensis HOM05D004450 ORTHO05D005491 2.7e-23 112.8 94 66.0
Atru.chr13.1280 Acer truncatum HOM05D004450 ORTHO05D005491 3.6e-23 112.5 111 57.7
MD08G1176200 Malus domestica HOM05D004450 ORTHO05D005491 4.7e-23 112.1 128 53.9
ClCG03G008890 Citrullus lanatus HOM05D004450 ORTHO05D005491 6.1e-23 111.7 117 56.4
Duzib093G0537 Durio zibethinus HOM05D004450 ORTHO05D005491 1.0e-22 110.9 108 60.2
CiPaw.05G231800 Carya illinoinensis HOM05D004450 ORTHO05D005491 3.0e-22 109.4 94 64.9
Prupe.1G510000 Prunus persica HOM05D004450 ORTHO05D005491 3.0e-22 109.4 94 63.8
MELO3C022819.2 Cucumis melo HOM05D004450 ORTHO05D005491 4.0e-22 109.0 115 57.4
Eucgr.H00921 Eucalyptus grandis HOM05D004450 ORTHO05D005491 4.0e-22 109.0 114 58.8
FAN04G1322 Fragaria x ananassa HOM05D004450 ORTHO05D005491 5.2e-22 108.6 94 64.9
Thecc.08G113700 Theobroma cacao HOM05D004450 ORTHO05D005491 5.2e-22 108.6 108 57.4
FAN08G3465 Fragaria x ananassa HOM05D004450 ORTHO05D005491 6.7e-22 108.2 94 64.9
FAN13G1849 Fragaria x ananassa HOM05D004450 ORTHO05D005491 6.7e-22 108.2 137 51.8
FAN18G0908 Fragaria x ananassa HOM05D004450 ORTHO05D005491 6.7e-22 108.2 94 64.9
FvH4_5g38230 Fragaria vesca HOM05D004450 ORTHO05D005491 8.8e-22 107.8 94 64.9
MD15G1361900 Malus domestica HOM05D004450 ORTHO05D005491 8.8e-22 107.8 121 55.4
Cfa015933 Carpinus fangiana HOM05D004450 ORTHO05D005491 2.0e-21 106.7 94 63.8
Nn1g05249 Nelumbo nucifera HOM05D004450 ORTHO05D005491 2.0e-21 106.7 94 63.8
Nn5g28982 Nelumbo nucifera HOM05D004450 ORTHO05D005491 2.6e-21 106.3 96 62.5
Sed0020591 Sechium edule HOM05D004450 ORTHO05D005491 2.6e-21 106.3 115 56.5
Haze_00557 Corylus avellana HOM05D004450 ORTHO05D005491 3.3e-21 105.9 118 55.1
Dinv13057 Davidia involucrata HOM05D004450 ORTHO05D005491 3.3e-21 105.9 117 53.0
Dinv44730 Davidia involucrata HOM05D004450 ORTHO05D005491 3.3e-21 105.9 120 52.5
CSS0047020 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 9.7e-21 104.4 92 60.9
Potri.005G170066 Populus trichocarpa HOM05D004450 ORTHO05D005491 9.7e-21 104.4 123 50.4
TAR628G1211 Trochodendron aralioides HOM05D004450 ORTHO05D005491 9.7e-21 104.4 145 49.0
arahy.Tifrunner.gnm1.ann1.IMKH6C Arachis hypogaea HOM05D004450 ORTHO05D005491 1.3e-20 104.0 76 80.3
QL12p035690 Quercus lobata HOM05D004450 ORTHO05D005491 1.7e-20 103.6 137 48.2
Actinidia10291 Actinidia chinensis HOM05D004450 ORTHO05D005491 2.2e-20 103.2 95 64.2
CAN.G535.11 Capsicum annuum HOM05D004450 ORTHO05D005491 2.2e-20 103.2 137 50.4
Manes.02G157000 Manihot esculenta HOM05D004450 ORTHO05D005491 2.2e-20 103.2 94 61.7
Ciclev10003301m.g Citrus clementina HOM05D004450 ORTHO05D005491 2.8e-20 102.8 95 62.1
Sabra05G0127500 Salix brachista HOM05D004450 ORTHO05D005491 2.8e-20 102.8 123 50.4
Nitab4.5_0002534g0010 Nicotiana tabacum HOM05D004450 ORTHO05D005491 4.8e-20 102.1 125 51.2
Potri.002G091700 Populus trichocarpa HOM05D004450 ORTHO05D005491 6.3e-20 101.7 94 59.6
CSS0015865 Camellia sinensis var. sinensis HOM05D004450 ORTHO05D005491 1.1e-19 100.9 92 59.8
Nitab4.5_0004450g0020 Nicotiana tabacum HOM05D004450 ORTHO05D005491 1.8e-19 100.1 121 51.2
Sabra02G0072500 Salix brachista HOM05D004450 ORTHO05D005491 1.8e-19 100.1 94 58.5
TWI36G0771 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 1.8e-19 100.1 94 59.6
TWI56G0952 Tripterygium wilfordii HOM05D004450 ORTHO05D005491 1.8e-19 100.1 94 58.5
Aqoxy6G00526 Aquilegia oxysepala HOM05D004450 ORTHO05D005491 2.4e-19 99.8 93 62.4
Gohir.D06G040400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 2.4e-19 99.8 108 55.6
Gohir.D06G038300 Gossypium hirsutum HOM05D004450 ORTHO05D005491 3.1e-19 99.4 108 55.6
Gorai.010G045100 Gossypium raimondii HOM05D004450 ORTHO05D005491 3.1e-19 99.4 108 55.6
Solyc04g072630.4 Solanum lycopersicum HOM05D004450 ORTHO05D005491 4.1e-19 99.0 134 47.8
Sopen04g028830 Solanum pennellii HOM05D004450 ORTHO05D005491 5.3e-19 98.6 134 47.8
Peaxi162Scf00168g00521 Petunia axillaris HOM05D004450 ORTHO05D005491 9.1e-19 97.8 135 49.6
Aa31LG7G6050 Aethionema arabicum HOM05D004450 ORTHO05D005491 1.6e-18 97.1 95 54.7
Thhalv10006527m.g Eutrema salsugineum HOM05D004450 ORTHO05D005491 1.6e-18 97.1 94 54.3
AL1G35490 Arabidopsis lyrata HOM05D004450 ORTHO05D005491 2.0e-18 96.7 94 55.3
CANSAT25G3861 Cannabis sativa HOM05D004450 ORTHO05D005491 2.0e-18 96.7 123 50.4
CARHR022410 Cardamine hirsuta HOM05D004450 ORTHO05D005491 3.5e-18 95.9 94 55.3
PGR042G3086 Punica granatum HOM05D004450 ORTHO05D005491 3.5e-18 95.9 96 56.2
AT1G22060 Arabidopsis thaliana HOM05D004450 ORTHO05D005491 4.5e-18 95.5 94 55.3
Carub.0001s2161 Capsella rubella HOM05D004450 ORTHO05D005491 5.9e-18 95.1 115 49.6
SalBow7G0866 Salvia bowleyana HOM05D004450 ORTHO05D005491 7.7e-18 94.7 92 55.4
Manes.18G071100 Manihot esculenta HOM05D004450 ORTHO05D005491 1.7e-17 93.6 124 48.4
Sp1g19560 Schrenkiella parvula HOM05D004450 ORTHO05D005491 5.0e-17 92.0 95 54.7
A09p42700 Brassica napus HOM05D004450 ORTHO05D005491 6.5e-17 91.7 95 54.7
BraA09t39746Z Brassica rapa HOM05D004450 ORTHO05D005491 6.5e-17 91.7 95 54.7
PSO541G1294 Papaver somniferum HOM05D004450 ORTHO05D005491 6.5e-17 91.7 122 50.8
Cpa.g.sc66.104 Carica papaya HOM05D004450 ORTHO05D005491 8.5e-17 91.3 126 45.2
BcaC05g26132 Brassica carinata HOM05D004450 ORTHO05D005491 1.1e-16 90.9 95 53.7
C05p21090 Brassica napus HOM05D004450 ORTHO05D005491 1.1e-16 90.9 95 53.7
BolC5t30807H Brassica oleracea HOM05D004450 ORTHO05D005491 1.1e-16 90.9 95 53.7
THA.LOC104800171 Tarenaya hassleriana HOM05D004450 ORTHO05D005491 1.5e-16 90.5 90 54.4
BcaB07g32225 Brassica carinata HOM05D004450 ORTHO05D005491 1.9e-16 90.1 95 53.7
HanXRQChr11g0321021 Helianthus annuus HOM05D004450 ORTHO05D005491 5.5e-16 88.6 92 57.6
PSO675G2430 Papaver somniferum HOM05D004450 ORTHO05D005491 5.5e-16 88.6 122 50.0
ECA232G3655 Erigeron canadensis HOM05D004450 ORTHO05D005491 1.2e-15 87.4 92 56.5
Rhsim06G0086600 Rhododendron simsii HOM05D004450 ORTHO05D005491 2.7e-15 86.3 138 47.1
ATR0564G059 Amborella trichopoda HOM05D004450 ORTHO05D005491 4.7e-15 85.5 119 52.1
DCAR_008706 Daucus carota HOM05D004450 ORTHO05D005491 6.1e-15 85.1 94 54.3
Lsat_1_v5_gn_9_43360 Lactuca sativa HOM05D004450 ORTHO05D005491 1.0e-14 84.3 92 55.4
Sc20g0003030 Simmondsia chinensis HOM05D004450 ORTHO05D005491 1.0e-14 84.3 111 51.4
SGA_v2.0_scaffold48G18010 Striga asiatica HOM05D004450 ORTHO05D005491 1.8e-14 83.6 117 47.0
Migut.C00198 Erythranthe guttata HOM05D004450 ORTHO05D005491 3.0e-14 82.8 94 53.2
Oeu024568.7 Olea europaea HOM05D004450 ORTHO05D005491 3.0e-14 82.8 92 53.3
AUR62034367 Chenopodium quinoa HOM05D004450 ORTHO05D005491 8.8e-14 81.3 101 50.5
Cc10_g05930 Coffea canephora HOM05D004450 ORTHO05D005491 1.5e-13 80.5 110 48.2
Gohir.A02G075404 Gossypium hirsutum HOM05D004450 ORTHO05D005491 3.4e-13 79.3 70 62.9
MBI02_g37828_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 4.4e-13 79.0 104 51.9
Zm00001eb140390 Zea mays HOM05D004450 ORTHO05D005491 7.5e-13 78.2 112 47.3
Hund26655 Selenicereus undatus HOM05D004450 ORTHO05D005491 1.7e-12 77.0 136 41.9
AUR62022339 Chenopodium quinoa HOM05D004450 ORTHO05D005491 2.2e-12 76.6 106 48.1
vmacro21221 Vaccinium macrocarpon HOM05D004450 ORTHO05D005491 2.8e-12 76.3 158 38.0
HanXRQChr02g0043761 Helianthus annuus HOM05D004450 ORTHO05D005491 4.8e-12 75.5 82 56.1
SEGI_35898 Sequoiadendron giganteum HOM05D004450 ORTHO05D005491 1.1e-11 74.3 97 48.5
Lsat_1_v5_gn_1_4060 Lactuca sativa HOM05D004450 ORTHO05D005491 4.1e-11 72.4 92 52.2
ECA247G3327 Erigeron canadensis HOM05D004450 ORTHO05D005491 5.4e-11 72.0 128 41.4
HPP92_005805 Vanilla planifolia HOM05D004450 ORTHO05D005491 1.2e-10 70.9 105 42.9
arahy.Tifrunner.gnm1.ann1.ZVY5TW Arachis hypogaea HOM05D003351 ORTHO05D003806 2.0e-10 70.1 41 92.7
HPP92_005785 Vanilla planifolia HOM05D004450 ORTHO05D005491 2.0e-10 70.1 105 42.9
Lj4C711G4 Lonicera japonica HOM05D004450 ORTHO05D005491 5.9e-10 68.6 59 66.1
unitig_749.g13887 Utricularia gibba HOM05D004450 ORTHO05D005491 1.5e-08 63.9 98 41.8
Actinidia15638 Actinidia chinensis HOM05D004450 ORTHO05D005491 2.5e-08 63.2 46 73.9
MBI05_g36570_MAGBIO Magnolia biondii HOM05D004450 ORTHO05D005491 2.1e-07 60.1 92 50.0
arahy.Tifrunner.gnm1.ann1.KEEV2U Arachis hypogaea HOM05D000602 ORTHO05D001147 4.7e-07 58.9 35 82.9
Gohir.A06G039400 Gossypium hirsutum HOM05D004450 ORTHO05D005491 8.0e-07 58.2 48 68.8
arahy.Tifrunner.gnm1.ann1.R2Q3Y9 Arachis hypogaea HOM05D000602 ORTHO05D001147 1.0e-06 57.8 35 82.9
arahy.Tifrunner.gnm1.ann1.9S7237 Arachis hypogaea HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
arahy.Tifrunner.gnm1.ann1.N43WCR Arachis hypogaea HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
CDE08G0361 Ceratophyllum demersum HOM05D004450 ORTHO05D005491 1.4e-06 57.4 100 35.0
Ca_01162_v3 Cicer arietinum L. HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
Glyma.15G019300 Glycine max HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
Lj3g0007096 Lotus japonicus HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
Lalb_Chr14g0373041 Lupinus albus HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
Phvul.005G166400 Phaseolus vulgaris HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
Psat5g296040 Pisum sativum HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
TPR.G6519 Trifolium pratense HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
VMungo1080G0884 Vigna mungo HOM05D000602 ORTHO05D001147 1.4e-06 57.4 30 93.3
Ah.05g168520 Amaranthus hybridus HOM05D004450 ORTHO05D005491 1.8e-06 57.0 120 37.5
arahy.Tifrunner.gnm1.ann1.A9D2UJ Arachis hypogaea HOM05D000602 ORTHO05D001147 3.0e-06 56.2 30 90.0
arahy.Tifrunner.gnm1.ann1.VEA7DZ Arachis hypogaea HOM05D000602 ORTHO05D001147 3.0e-06 56.2 30 90.0
Glyma.13G354900 Glycine max HOM05D000602 ORTHO05D001147 3.0e-06 56.2 30 90.0
Medtr2g101040 Medicago truncatula HOM05D000602 ORTHO05D001147 3.0e-06 56.2 30 90.0
BcaB02g07047 Brassica carinata HOM05D000602 ORTHO05D001147 5.2e-06 55.5 30 90.0
Lj9C512G10 Lonicera japonica HOM05D000103 ORTHO05D000049 5.2e-06 55.5 30 93.3
Prupe.3G059400 Prunus persica HOM05D000602 ORTHO05D001147 5.2e-06 55.5 30 90.0
Aa31LG4G80 Aethionema arabicum HOM05D000602 ORTHO05D001147 6.8e-06 55.1 30 90.0
Manes.11G034000 Manihot esculenta HOM05D000602 ORTHO05D001147 6.8e-06 55.1 30 90.0
SalBow1G4284 Salvia bowleyana HOM05D000602 ORTHO05D001147 6.8e-06 55.1 30 90.0
HanXRQChr02g0032241 Helianthus annuus HOM05D000602 ORTHO05D001147 8.8e-06 54.7 30 90.0
HanXRQChr09g0275721 Helianthus annuus HOM05D000602 ORTHO05D001147 8.8e-06 54.7 30 90.0


User provided reference genes

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