Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 0.0e+00 1112.1 539 100.0
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.2e-308 1062.4 597 88.8
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 1.9e-274 948.7 537 82.1
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.7e-273 944.9 537 81.6
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 5.7e-271 937.2 537 82.3
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.1e-269 932.9 527 83.3
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 1.0e-267 926.4 531 80.6
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 1.4e-266 922.5 537 81.0
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 2.1e-265 918.7 524 83.2
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 8.8e-264 913.3 519 83.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.2e-257 892.9 536 78.9
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 6.3e-254 880.6 536 78.4
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.8e-245 852.4 471 84.5
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 2.6e-239 832.0 519 73.4
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 5.7e-239 830.9 515 74.6
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 5.7e-239 830.9 526 73.8
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.3e-238 829.7 519 73.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.7e-238 828.2 516 75.0
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 9.2e-237 823.5 520 73.1
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.6e-236 822.8 520 73.3
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 5.9e-236 820.8 525 71.8
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.0e-235 820.1 518 72.2
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.0e-235 820.1 518 71.4
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.3e-235 818.9 517 73.1
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.5e-234 815.5 538 71.9
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 7.3e-234 813.9 518 71.4
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.6e-233 812.8 519 72.8
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.1e-233 812.4 515 73.8
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 2.1e-233 812.4 519 72.8
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.8e-233 812.0 516 72.3
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 3.6e-233 811.6 518 70.8
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.0e-232 810.1 517 72.9
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 1.8e-232 809.3 522 70.9
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 6.8e-232 807.4 532 69.5
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 8.9e-232 807.0 518 70.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 7.5e-231 803.9 532 69.4
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.7e-230 802.7 518 70.8
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.7e-230 801.6 527 68.1
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 4.9e-230 801.2 527 67.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 8.3e-230 800.4 550 68.5
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 1.1e-229 800.0 525 68.4
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.1e-229 798.1 532 68.6
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.3e-227 793.1 524 69.5
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 3.9e-227 791.6 514 70.6
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 3.3e-226 788.5 522 68.2
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.6e-225 786.2 525 67.2
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 2.8e-225 785.4 521 68.7
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 2.8e-225 785.4 525 67.4
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 4.7e-225 784.6 521 68.5
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 8.0e-225 783.9 526 67.9
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 8.0e-225 783.9 526 67.9
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 3.1e-224 781.9 521 68.1
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.4e-223 778.5 518 70.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 9.8e-223 776.9 521 67.6
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 2.9e-222 775.4 514 69.6
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 2.9e-222 775.4 513 68.6
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 6.4e-222 774.2 514 69.1
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 8.3e-222 773.9 513 68.4
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 8.3e-222 773.9 514 68.9
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 5.4e-221 771.2 545 65.5
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 7.0e-221 770.8 530 65.8
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.2e-220 770.0 518 70.1
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 6.0e-220 767.7 530 67.4
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.0e-219 766.9 530 67.4
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.3e-219 766.5 546 65.0
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.3e-219 766.5 489 71.2
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 8.6e-219 763.8 531 67.4
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 1.5e-218 763.1 530 65.7
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 7.3e-218 760.8 530 68.1
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.6e-217 759.6 514 68.7
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 6.4e-214 747.7 499 68.3
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.3e-211 740.0 469 71.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 8.6e-211 737.3 519 66.7
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 2.5e-210 735.7 509 68.6
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.6e-209 733.0 559 63.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 9.9e-207 723.8 524 64.3
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.4e-205 719.2 532 63.5
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 6.0e-204 714.5 517 65.6
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 3.3e-202 708.8 515 63.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 8.1e-201 704.1 522 64.8
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.8e-200 703.0 518 62.4
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 9.0e-200 700.7 516 66.1
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.2e-198 696.0 688 52.0
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 6.4e-198 694.5 585 59.7
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 1.3e-195 686.8 439 72.4
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-194 683.7 510 66.7
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 1.2e-191 673.7 521 59.1
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.7e-190 669.8 436 69.3
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.9e-189 666.4 400 76.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.2e-189 665.2 578 59.2
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 3.9e-187 658.7 549 61.0
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 3.1e-184 649.0 391 75.7
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.2e-182 642.9 501 61.7
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 3.5e-180 635.6 517 59.8
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 4.6e-180 635.2 506 62.3
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.6e-169 600.1 419 64.9
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.1e-168 597.4 491 60.9
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 3.2e-165 585.9 527 52.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.0e-163 580.9 532 52.8
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.1e-160 568.9 362 72.7
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 9.7e-154 547.7 516 56.2
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 3.1e-152 542.7 507 53.1
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.7e-150 537.0 332 74.4
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-144 517.3 304 78.0
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 3.0e-139 499.6 518 50.6
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 9.7e-138 494.6 348 67.5
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.4e-136 490.7 539 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 8.5e-134 481.5 435 52.4
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 2.6e-130 469.9 283 73.9
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.7e-130 468.8 354 65.0
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.2e-124 451.1 343 62.7
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.2e-123 445.7 250 80.8
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 2.0e-119 433.7 229 86.9
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.0e-111 407.1 229 79.5
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 2.0e-111 407.1 229 79.5
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 3.5e-111 406.4 287 67.2
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 3.5e-111 406.4 230 78.7
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.8e-83 314.3 531 37.7
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.1e-83 313.5 206 69.4
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 5.3e-83 312.8 206 69.4
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 6.0e-79 299.3 165 80.0
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.1e-69 268.5 559 32.0
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.1e-69 268.5 587 32.4
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 5.6e-69 266.2 539 32.7
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.1e-67 261.9 169 72.2
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 2.4e-67 260.8 240 53.8
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 6.9e-67 259.2 502 33.3
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.2e-56 223.8 365 40.8
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 7.1e-56 222.6 195 54.4
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 6.1e-47 193.0 263 41.4
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 2.9e-41 174.1 337 34.7
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 6.5e-41 172.9 179 47.5
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.2e-34 152.1 85 74.1
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 2.7e-31 141.0 99 67.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 8.0e-31 139.4 101 68.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.2e-28 131.3 194 41.2
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 3.7e-28 130.6 78 75.6
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.1e-27 129.0 109 57.8
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 5.9e-26 123.2 96 62.5
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.7e-25 121.7 119 52.1
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.1e-23 113.2 85 63.5
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.7e-15 87.0 270 28.9
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 3.0e-14 84.3 124 40.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 5.7e-13 80.1 41 75.6
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.8e-11 75.1 95 43.2
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 6.6e-09 66.6 51 56.9
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 8.6e-09 66.2 81 42.0
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 9.5e-08 62.8 62 43.5


User provided reference genes

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