Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 1.0e-151 540.0 279 100.0
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 1.4e-132 476.5 278 88.8
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 3.7e-88 328.9 279 63.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 6.3e-88 328.2 275 66.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 1.4e-87 327.0 283 66.1
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 3.1e-87 325.9 278 64.7
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 3.8e-85 318.9 278 65.8
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 3.8e-85 318.9 284 64.4
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 6.5e-85 318.2 278 64.4
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 4.2e-84 315.5 253 69.6
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 6.7e-82 308.1 278 61.9
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.1e-81 307.4 277 61.0
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 3.3e-81 305.8 204 74.5
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 5.7e-81 305.1 205 73.7
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 4.8e-80 302.0 277 61.4
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.1e-79 300.8 188 78.7
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.4e-79 300.4 233 66.5
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.8e-79 300.1 216 71.8
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.8e-79 300.1 205 73.2
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 1.8e-79 300.1 215 70.2
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 2.4e-79 299.7 215 70.7
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.4e-79 299.7 227 67.8
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 3.1e-79 299.3 229 69.0
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 9.1e-79 297.7 243 64.2
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.2e-78 297.4 215 68.8
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.2e-78 297.4 277 60.3
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.2e-78 297.4 207 71.5
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.6e-78 296.2 239 64.9
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 2.6e-78 296.2 239 64.9
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.6e-78 296.2 191 74.9
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 3.4e-78 295.8 250 62.8
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.4e-78 295.8 240 65.8
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 4.5e-78 295.4 214 71.5
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 4.5e-78 295.4 189 76.2
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 5.9e-78 295.0 283 59.4
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 1.3e-77 293.9 210 71.0
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.9e-77 292.7 256 63.7
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 2.9e-77 292.7 221 68.3
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 3.8e-77 292.4 190 74.7
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 6.5e-77 291.6 274 58.4
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 8.5e-77 291.2 210 69.5
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.1e-76 290.8 227 67.0
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.9e-76 290.0 278 58.6
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 2.5e-76 289.7 210 69.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 2.5e-76 289.7 226 65.0
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 3.2e-76 289.3 210 68.6
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 4.2e-76 288.9 259 61.8
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 4.2e-76 288.9 249 62.2
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 5.5e-76 288.5 265 59.6
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 5.5e-76 288.5 198 74.2
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 5.5e-76 288.5 214 69.6
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 9.4e-76 287.7 262 60.7
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 9.4e-76 287.7 263 62.0
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 9.4e-76 287.7 241 63.9
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.2e-75 287.3 263 60.1
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 2.1e-75 286.6 210 68.1
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.1e-75 286.6 210 68.1
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 2.1e-75 286.6 217 66.4
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 6.1e-75 285.0 195 73.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.1e-75 285.0 220 65.9
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 6.1e-75 285.0 220 65.9
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 6.1e-75 285.0 263 62.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 7.9e-75 284.6 252 61.5
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.0e-74 284.3 207 70.5
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.0e-74 284.3 196 71.9
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.4e-74 283.9 257 62.3
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 1.4e-74 283.9 245 61.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.8e-74 283.5 226 65.9
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.8e-74 283.5 196 73.0
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 3.0e-74 282.7 247 62.8
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.9e-74 282.3 191 71.7
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 3.9e-74 282.3 237 65.0
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 6.7e-74 281.6 276 57.2
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 8.8e-74 281.2 250 63.2
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 8.8e-74 281.2 286 55.9
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 8.8e-74 281.2 260 61.2
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.1e-73 280.8 196 71.4
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 2.6e-73 279.6 250 63.2
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 2.6e-73 279.6 250 63.2
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 3.3e-73 279.3 281 58.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 5.7e-73 278.5 207 68.6
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 5.7e-73 278.5 265 61.1
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 7.4e-73 278.1 265 60.8
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 9.7e-73 277.7 263 60.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 9.7e-73 277.7 210 69.0
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.2e-72 276.6 173 77.5
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 1.4e-71 273.9 274 56.9
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.1e-71 272.7 163 80.4
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 5.3e-71 271.9 177 74.0
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.2e-70 270.8 258 57.8
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.5e-70 270.4 159 80.5
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 8.5e-69 264.6 191 69.6
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.1e-68 264.2 206 65.0
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.8e-66 256.9 224 60.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 1.5e-65 253.8 270 55.2
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.3e-64 250.8 140 85.0
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.8e-63 246.9 197 63.5
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 3.1e-63 246.1 147 78.9
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 5.0e-61 238.8 320 46.6
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 8.5e-61 238.0 167 69.5
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.3e-58 229.9 205 61.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 2.0e-57 226.9 187 57.8
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 4.8e-56 222.2 190 61.1
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 2.0e-54 216.9 181 63.0
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 7.7e-54 214.9 261 51.3
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 7.2e-52 208.4 125 80.0
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 6.8e-50 201.8 108 88.9
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.4e-41 172.9 198 46.5
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 4.9e-40 169.1 198 45.5
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.8e-39 167.2 206 47.6
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 7.0e-39 165.2 97 81.4
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 4.5e-38 162.5 97 80.4
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 5.0e-37 159.1 169 49.1
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 5.0e-37 159.1 186 53.2
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 7.3e-36 155.2 140 60.7
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.3e-32 144.4 80 85.0
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.4e-31 140.2 111 65.8
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 4.1e-31 139.4 78 83.3
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 7.0e-31 138.7 118 67.8
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 2.1e-27 127.1 162 46.9
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.4e-26 124.4 78 76.9
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 2.6e-25 120.2 194 41.8
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 8.1e-19 98.6 79 69.6
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 4.1e-15 86.3 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.1e-15 86.3 51 80.4
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 5.4e-15 85.9 105 50.5
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.5e-14 83.2 55 74.5
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.6e-14 82.8 142 44.4
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 6.6e-13 79.0 47 76.6
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 3.3e-12 76.6 47 76.6
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 6.8e-10 68.9 47 72.3


User provided reference genes

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