Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 1.7e-168 595.9 298 100.0
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 4.7e-126 454.9 274 87.2
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 3.5e-113 412.1 304 70.1
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.7e-112 409.8 319 67.7
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.6e-110 403.3 319 66.1
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.6e-110 403.3 319 66.1
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 3.4e-92 342.4 316 58.5
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 7.1e-90 334.7 320 59.7
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.9e-88 328.9 311 57.2
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 8.7e-88 327.8 313 56.5
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 8.7e-88 327.8 313 56.5
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 8.7e-88 327.8 313 56.5
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 8.7e-88 327.8 313 56.5
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 2.5e-87 326.2 317 55.5
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 4.3e-87 325.5 317 55.5
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 4.3e-87 325.5 310 56.8
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 1.6e-86 323.6 313 56.2
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 8.2e-86 321.2 316 55.7
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.4e-85 320.5 319 54.5
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 2.5e-82 309.7 321 52.6
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 2.5e-82 309.7 321 52.6
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 5.5e-82 308.5 279 62.0
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 9.3e-82 307.8 327 52.9
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 4.6e-81 305.4 316 52.5
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.1e-81 305.1 308 55.8
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.1e-81 305.1 308 55.8
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 6.1e-81 305.1 321 51.7
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.3e-80 303.1 317 54.3
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.0e-80 302.8 308 55.5
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.7e-79 298.5 310 54.8
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 6.3e-78 295.0 329 51.4
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 8.2e-78 294.7 317 53.0
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 8.2e-78 294.7 317 53.0
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 8.2e-78 294.7 317 53.0
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.2e-76 290.8 317 52.1
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 3.0e-64 249.6 307 49.5
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 1.1e-63 247.7 257 54.9
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 3.6e-57 226.1 264 51.9
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 3.3e-55 219.5 258 50.4
HanXRQChr05g0152391 Helianthus annuus HOM05D001750 ORTHO05D001825 3.1e-53 213.0 204 53.4
HanXRQChr11g0323701 Helianthus annuus HOM05D001750 ORTHO05D001825 3.1e-53 213.0 204 53.4
EL10Ac5g11664 Beta vulgaris HOM05D001750 ORTHO05D001825 7.0e-53 211.8 195 55.4
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 4.5e-52 209.1 227 54.2
Gohir.A12G084295 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.3e-48 196.8 193 55.4
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 4.0e-48 196.1 319 38.6
Lalb_Chr16g0388591 Lupinus albus HOM05D001750 ORTHO05D001825 7.7e-44 181.8 122 75.4
HanXRQChr01g0020111 Helianthus annuus HOM05D001750 ORTHO05D001825 7.2e-42 175.3 177 52.5
BolSC35t60699H Brassica oleracea HOM05D001750 ORTHO05D001825 3.0e-32 143.3 186 47.8
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 6.8e-32 142.1 79 88.6
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.8e-32 142.1 159 55.3
Lj9P89T20 Lonicera japonica HOM05D001750 ORTHO05D001825 1.6e-28 131.0 167 47.3
GSVIVG01004971001 Vitis vinifera HOM05D001750 ORTHO05D001825 7.3e-26 122.1 78 76.9
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 2.8e-25 120.2 68 83.8
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 6.2e-25 119.0 154 49.4
PGSC0003DMG400010958 Solanum tuberosum HOM05D001750 ORTHO05D001825 8.0e-25 118.6 69 81.2
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 1.4e-24 117.9 68 85.3
Nn212s45208 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.3e-24 117.1 134 53.0
Gohir.A08G055950 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.2e-24 115.9 112 57.1
Prupe.2G145900 Prunus persica HOM05D001750 ORTHO05D001825 2.0e-23 114.0 92 65.2
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 2.6e-23 113.6 68 77.9
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 2.6e-23 113.6 68 77.9
Ciclev10013979m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.4e-23 113.2 69 78.3
Ciclev10013982m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.4e-23 113.2 69 78.3
Ciclev10013988m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.4e-23 113.2 69 78.3
Ciclev10013998m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.4e-23 113.2 69 78.3
Ciclev10014001m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.4e-23 113.2 69 78.3
Ciclev10018421m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.4e-23 113.2 69 78.3
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-23 112.8 74 73.0
Ciclev10030453m.g Citrus clementina HOM05D001750 ORTHO05D001825 5.8e-23 112.5 86 66.3
Gohir.A04G058952 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.5e-23 112.1 112 52.7
Glyma.06G151800 Glycine max HOM05D001750 ORTHO05D001825 2.2e-22 110.5 173 47.4
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.9e-22 110.2 68 77.9
AL7G50360 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 3.2e-21 106.7 69 76.8
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 3.2e-21 106.7 67 74.6
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 3.2e-21 106.7 69 72.5
arahy.Tifrunner.gnm1.ann1.X5PJ61 Arachis hypogaea HOM05D000445 ORTHO05D000314 5.4e-21 105.9 91 63.7
HanXRQChr13g0413591 Helianthus annuus HOM05D001750 ORTHO05D001825 5.4e-21 105.9 124 47.6
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-20 104.8 80 67.5
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-20 104.4 68 76.5
Gorai.006G066100 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.6e-20 104.4 74 71.6
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 2.7e-20 103.6 116 53.4
BolC9t56810H Brassica oleracea HOM05D001750 ORTHO05D001825 3.5e-20 103.2 80 70.0
Solyc12g033070.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.5e-20 103.2 72 69.4
arahy.Tifrunner.gnm1.ann1.TS71JS Arachis hypogaea HOM05D001750 ORTHO05D001825 5.0e-19 99.4 67 79.1
Gorai.010G151000 Gossypium raimondii HOM05D001750 ORTHO05D001825 8.6e-19 98.6 74 66.2
Oeu012766.1 Olea europaea HOM05D001750 ORTHO05D001825 7.3e-18 95.5 72 66.7
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 9.5e-18 95.1 167 41.3
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 1.2e-17 94.7 319 31.7
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.6e-17 94.4 59 76.3
Psat0ss8367g0120 Pisum sativum HOM05D001750 ORTHO05D001825 1.6e-17 94.4 51 90.2
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.2e-17 92.4 197 33.5
HanXRQChr17g0557811 Helianthus annuus HOM05D001750 ORTHO05D001825 8.1e-17 92.0 79 62.0
TPR.G34249 Trifolium pratense HOM05D001750 ORTHO05D048894 2.0e-15 87.4 64 70.3
CARHR212490 Cardamine hirsuta HOM05D001750 ORTHO05D001825 4.4e-15 86.3 72 66.7
Solyc02g011710.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.9e-14 83.6 53 75.5
Solyc11g044645.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.9e-14 82.8 78 59.0
Solyc11g044643.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 6.4e-14 82.4 109 42.2
Glyma.15G246000 Glycine max HOM05D001750 ORTHO05D001825 1.1e-13 81.6 77 57.1
RcHm_v2.0_CPg0501681 Rosa chinensis HOM05D001750 ORTHO05D001825 3.2e-13 80.1 63 68.3
Solyc12g033000.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 9.2e-13 78.6 55 70.9
Nn031s41610 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.2e-12 78.2 51 80.4
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.5e-12 76.6 71 47.9
Lalb_Chr16g0388571 Lupinus albus HOM05D001750 ORTHO05D001825 1.7e-11 74.3 38 89.5
Solyc05g013090.3 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.0e-11 73.6 109 43.1
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.1e-11 72.8 71 47.9
BolC2t10591H Brassica oleracea HOM05D001750 ORTHO05D001825 1.1e-10 71.6 69 56.5
Solyc05g013080.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.3e-10 70.1 57 49.1
Gorai.010G133500 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.6e-09 67.8 58 60.3
Gohir.D06G115850 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.7e-09 66.2 58 60.3
TPR.G19339 Trifolium pratense HOM05D001750 ORTHO05D001825 4.7e-09 66.2 49 67.3
Medtr3g032590 Medicago truncatula HOM05D000267 ORTHO05D016230 1.1e-08 65.1 41 78.0
Nn1g00556 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.6e-07 60.5 60 46.7
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 3.4e-07 60.1 70 52.9
Oeu016296.1 Olea europaea HOM05D001750 ORTHO05D001825 1.3e-06 58.2 30 80.0


User provided reference genes

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