Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 9.6e-181 636.7 327 100.0
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 1.4e-54 217.6 119 100.0
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 1.4e-54 217.6 119 100.0
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 1.4e-54 217.6 119 100.0
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 5.5e-51 205.7 117 96.6
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.2e-39 167.2 95 96.8
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.2e-39 167.2 95 96.8
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 3.7e-39 166.4 97 95.9
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 6.3e-39 165.6 128 78.9
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 5.0e-36 156.0 109 83.5
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.5e-35 152.5 174 56.3
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 1.6e-34 151.0 84 100.0
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 1.6e-34 151.0 84 100.0
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 1.6e-34 151.0 84 100.0
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 2.1e-34 150.6 84 98.8
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.3e-33 147.1 101 86.1
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.0e-33 146.7 84 97.6
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 3.0e-33 146.7 84 97.6
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 3.0e-33 146.7 84 97.6
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 3.0e-33 146.7 84 97.6
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 3.0e-33 146.7 84 97.6
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 5.2e-33 146.0 84 97.6
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 5.2e-33 146.0 84 97.6
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 5.2e-33 146.0 84 97.6
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 5.2e-33 146.0 84 97.6
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 5.2e-33 146.0 84 97.6
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 5.2e-33 146.0 84 97.6
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 8.8e-33 145.2 84 96.4
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.1e-32 144.8 85 95.3
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 2.6e-32 143.7 84 95.2
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 2.6e-32 143.7 84 95.2
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 2.6e-32 143.7 81 97.5
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 7.4e-32 142.1 100 85.0
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.4e-30 137.9 85 91.8
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.8e-30 137.5 84 92.9
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 7.0e-30 135.6 150 61.3
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.2e-29 134.8 86 89.5
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 2.6e-29 133.7 82 92.7
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 7.7e-29 132.1 84 90.5
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 7.7e-29 132.1 84 90.5
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 1.3e-28 131.3 108 75.0
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 8.5e-28 128.6 115 67.0
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.5e-27 127.1 74 97.3
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.5e-27 127.1 74 97.3
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 1.2e-26 124.8 72 97.2
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 1.2e-26 124.8 84 88.1
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 1.2e-26 124.8 84 88.1
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 1.2e-26 124.8 84 88.1
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.2e-26 124.8 72 97.2
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.6e-26 124.4 72 97.2
Sc04g0005540 Simmondsia chinensis HOM05D011380 ORTHO05D016005 4.7e-26 122.9 79 83.5
CAN.G1126.6 Capsicum annuum HOM05D011380 ORTHO05D016005 1.2e-24 118.2 94 69.1
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.2e-24 118.2 70 95.7
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 7.5e-24 115.5 84 81.0
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.1e-22 111.7 111 63.1
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 7.0e-22 109.0 84 78.6
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 1.6e-21 107.8 63 96.8
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 2.7e-21 107.1 62 96.8
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 5.9e-21 105.9 65 92.3
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 1.3e-20 104.8 63 93.7
Nitab4.5_0002452g0040 Nicotiana tabacum HOM05D011380 ORTHO05D016005 1.3e-20 104.8 96 62.5
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 6.5e-20 102.4 97 70.1
CAN.G266.11 Capsicum annuum HOM05D011380 ORTHO05D016005 8.5e-20 102.1 94 61.7
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 7.2e-19 99.0 90 71.1
Nitab4.5_0009709g0080 Nicotiana tabacum HOM05D008609 ORTHO05D010987 5.2e-17 92.8 79 64.6
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 4.4e-16 89.7 54 94.4
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 6.3e-15 85.9 114 54.4
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 1.2e-13 81.6 54 83.3
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 7.7e-13 79.0 69 72.5
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 7.7e-13 79.0 69 72.5
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 2.9e-12 77.0 45 95.6
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.9e-12 77.0 96 45.8
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.3e-11 73.6 54 77.8
Gorai.001G165500 Gossypium raimondii HOM05D011380 ORTHO05D016005 6.1e-10 69.3 73 52.1
Nitab4.5_0000651g0220 Nicotiana tabacum HOM05D011380 ORTHO05D016005 8.0e-10 68.9 88 48.9
Oeu013685.1 Olea europaea HOM05D008204 ORTHO05D010378 1.0e-09 68.6 40 90.0
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.4e-09 68.2 109 47.7
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 8.9e-09 65.5 84 52.4
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 2.0e-08 64.3 45 82.2
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 5.7e-08 62.8 51 74.5
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.3e-07 61.6 45 80.0
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 2.2e-07 60.8 70 60.0
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 2.2e-07 60.8 70 60.0
Nitab4.5_0000172g2070 Nicotiana tabacum HOM05D008204 ORTHO05D010378 3.2e-06 57.0 34 85.3


User provided reference genes

Program Settings