Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-120 436.0 210 100.0
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-120 436.0 210 100.0
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-120 436.0 210 100.0
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 9.4e-113 410.2 210 94.8
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 9.4e-113 410.2 210 94.8
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 9.4e-113 410.2 210 94.8
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-112 409.8 209 94.3
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 3.1e-108 395.2 209 90.9
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 5.3e-108 394.4 209 91.9
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 7.0e-108 394.0 210 91.4
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-107 392.9 208 90.9
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.6e-107 392.9 208 90.9
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.5e-105 385.6 206 89.8
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 4.2e-105 384.8 209 89.5
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.6e-104 382.9 192 94.3
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 5.2e-103 377.9 210 87.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.4e-100 369.0 190 92.6
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 5.4e-100 367.9 188 93.6
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 5.9e-99 364.4 189 92.1
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.9e-98 362.1 210 84.3
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 5.0e-98 361.3 211 84.4
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 5.0e-98 361.3 211 84.4
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 2.5e-97 359.0 189 91.0
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 5.5e-97 357.8 208 84.6
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 1.6e-96 356.3 200 86.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 2.1e-96 355.9 187 92.0
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.3e-95 352.4 168 100.0
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 3.0e-95 352.1 179 93.3
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 5.2e-95 351.3 168 99.4
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.9e-95 350.5 189 87.8
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 7.5e-94 347.4 185 88.6
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 2.2e-93 345.9 190 88.4
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.7e-93 345.1 189 87.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.4e-92 343.2 188 87.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.4e-92 343.2 188 87.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.4e-92 343.2 188 87.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 7.0e-92 340.9 202 81.2
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.0e-91 339.3 209 81.8
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.9e-91 337.8 190 85.3
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.8e-91 337.4 190 85.3
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.8e-91 337.4 190 85.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.5e-89 332.4 167 95.2
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-88 329.7 176 90.9
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.3e-87 325.9 185 84.3
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 5.2e-87 324.7 168 92.3
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 6.8e-87 324.3 165 92.1
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.0e-86 322.8 192 82.8
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.9e-85 318.2 199 77.9
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.9e-84 316.2 168 90.5
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 2.7e-83 312.4 190 81.1
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-82 310.1 197 75.6
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.9e-82 308.5 167 87.4
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.1e-81 307.0 177 84.7
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 3.6e-80 302.0 170 85.9
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 8.9e-79 297.4 167 86.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-78 296.2 169 84.6
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 6.4e-77 291.2 164 86.0
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 6.8e-71 271.2 209 68.9
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.8e-71 271.2 189 72.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 5.8e-70 268.1 150 84.7
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-68 262.3 168 79.8
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.9e-65 253.1 124 93.5
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.4e-60 236.9 133 85.0
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.9e-60 236.5 126 87.3
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.5e-57 226.9 130 86.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-55 220.3 177 67.8
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.6e-54 216.1 154 70.8
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 2.9e-53 212.6 205 60.0
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 2.9e-53 212.6 205 60.0
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.2e-52 208.8 113 83.2
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 2.7e-51 206.1 111 88.3
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.9e-47 191.4 110 82.7
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 3.4e-38 162.5 91 89.0
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 7.4e-33 144.8 131 61.8
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-25 119.8 91 64.8
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.3e-23 112.1 67 80.6
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.9e-22 108.6 109 55.0
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 3.0e-18 96.3 53 88.7
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.7e-16 89.4 53 77.4
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 6.3e-16 88.6 56 69.6
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 4.1e-15 85.9 63 69.8
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 9.1e-15 84.7 43 90.7
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 7.2e-12 75.1 190 32.6
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.2e-11 74.3 53 62.3
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 2.7e-11 73.2 68 58.8
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.6e-09 66.6 40 82.5
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 2.6e-09 66.6 47 68.1
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 4.4e-09 65.9 59 62.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 8.2e-08 61.6 32 84.4


User provided reference genes

Program Settings