Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.4e-226 788.9 520 100.0
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.2e-194 682.2 535 82.8
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.4e-117 425.6 523 61.2
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.9e-114 417.2 531 57.4
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.0e-108 397.1 536 52.4
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 3.0e-107 393.3 491 57.4
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 6.6e-107 392.1 525 59.0
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 6.6e-107 392.1 529 48.0
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 4.3e-106 389.4 539 60.1
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 3.6e-105 386.3 527 55.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 4.7e-105 386.0 519 52.0
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.3e-104 383.6 521 51.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 9.2e-101 371.7 242 76.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 2.7e-100 370.2 242 75.6
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 4.6e-100 369.4 242 75.2
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 6.0e-100 369.0 242 75.6
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.0e-99 368.2 263 70.0
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 2.3e-99 367.1 240 77.1
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.3e-99 367.1 322 63.0
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.0e-99 366.7 277 67.9
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.9e-99 366.3 242 74.8
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 8.6e-99 365.2 326 63.8
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 8.6e-99 365.2 294 67.3
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 1.1e-98 364.8 241 75.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.5e-98 364.4 242 74.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.5e-98 364.4 242 74.0
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.5e-98 364.4 242 74.0
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 3.3e-98 363.2 239 76.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 3.3e-98 363.2 241 75.9
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 5.6e-98 362.5 324 62.0
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.5e-98 361.7 327 63.0
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 2.1e-97 360.5 525 48.4
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.7e-97 359.4 314 66.9
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 8.1e-97 358.6 535 53.8
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 8.1e-97 358.6 324 61.4
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 1.1e-96 358.2 521 51.8
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.4e-96 357.8 242 74.4
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.3e-96 357.1 518 53.7
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 4.0e-96 356.3 242 74.0
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 4.0e-96 356.3 242 74.0
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 4.0e-96 356.3 242 74.0
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 4.0e-96 356.3 241 73.4
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 6.8e-96 355.5 242 73.6
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 6.8e-96 355.5 241 74.7
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 6.8e-96 355.5 239 74.9
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 8.9e-96 355.1 301 63.8
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 8.9e-96 355.1 241 74.3
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.2e-95 354.8 242 73.6
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.5e-95 354.4 303 64.0
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.5e-95 354.4 522 51.5
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.0e-95 354.0 287 66.6
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 3.4e-95 353.2 336 60.4
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 3.4e-95 353.2 526 57.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 4.4e-95 352.8 533 50.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 7.5e-95 352.1 521 54.5
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.8e-95 351.7 528 50.4
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 9.8e-95 351.7 287 66.6
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.3e-94 351.3 302 63.2
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.3e-94 351.3 241 73.9
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.7e-94 350.9 314 61.8
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.2e-94 350.5 326 64.1
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 6.4e-94 349.0 533 52.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 8.3e-94 348.6 524 45.6
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 1.1e-93 348.2 308 65.3
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.1e-93 348.2 524 53.8
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.1e-93 348.2 327 59.9
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 1.9e-93 347.4 284 64.8
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.9e-93 347.4 241 73.0
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.2e-93 346.7 529 51.8
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 7.1e-93 345.5 319 60.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.2e-92 344.7 239 73.6
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.7e-92 343.6 522 51.9
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 4.6e-92 342.8 238 73.1
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 6.0e-92 342.4 325 60.6
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.8e-92 342.0 528 50.4
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.9e-91 339.7 530 50.8
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.3e-90 336.7 322 60.6
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 3.3e-90 336.7 320 60.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 3.3e-90 336.7 237 68.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 5.6e-90 335.9 240 71.2
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 9.5e-90 335.1 528 50.9
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 8.1e-89 332.0 521 54.1
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.1e-88 331.6 537 48.8
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.8e-88 330.9 526 49.2
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.3e-88 330.5 239 69.0
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 5.2e-88 329.3 329 56.2
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 5.8e-87 325.9 317 57.4
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 5.8e-87 325.9 246 67.5
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 9.9e-87 325.1 312 60.3
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.2e-86 323.9 293 59.7
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 8.4e-86 322.0 293 59.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 8.4e-86 322.0 265 62.6
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.9e-85 320.9 237 68.8
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.1e-85 319.7 241 65.1
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-84 318.2 318 57.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.2e-84 318.2 242 66.9
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.7e-84 317.0 323 56.7
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 4.6e-84 316.2 312 59.6
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.9e-83 313.2 240 66.2
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.9e-82 310.8 329 55.6
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 7.3e-82 308.9 317 54.6
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.6e-81 307.8 319 54.2
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.8e-81 307.0 242 64.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.6e-81 306.6 312 54.2
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.2e-81 305.8 241 65.6
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.0e-80 303.1 524 49.8
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.0e-80 303.1 342 54.1
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.6e-79 300.4 240 62.9
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 3.4e-79 300.1 343 53.6
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.4e-79 299.7 530 45.8
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 4.4e-79 299.7 317 53.6
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.2e-78 297.4 213 70.9
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 9.3e-77 292.0 299 54.8
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.7e-75 287.7 296 56.1
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 3.9e-75 286.6 521 45.3
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 5.8e-71 272.7 223 59.2
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 9.6e-66 255.4 298 48.3
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.6e-65 254.6 234 56.4
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 3.7e-57 226.9 270 45.9
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 5.0e-46 189.9 242 42.1
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 8.5e-46 189.1 243 41.6
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.3e-43 181.8 247 40.5
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 8.7e-43 179.1 244 41.4
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 3.3e-42 177.2 112 75.9
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.5e-38 162.9 295 37.6
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 8.5e-38 162.5 247 36.8
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 3.6e-36 157.1 89 78.7
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 7.4e-34 149.4 234 37.6
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 4.8e-33 146.7 226 38.1
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 6.3e-33 146.4 201 44.8
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.9e-31 139.8 229 35.8
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.4e-29 135.2 213 37.6
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 6.1e-28 129.8 225 31.6
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.1e-24 119.0 223 31.4
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 2.6e-23 114.4 206 35.4
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 3.5e-23 114.0 146 40.4
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 5.9e-23 113.2 223 30.0
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 4.7e-20 103.6 161 45.3
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 5.7e-18 96.7 115 52.2
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 1.3e-14 85.5 123 40.7
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 3.2e-13 80.9 131 36.6
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.8e-11 75.1 91 40.7
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 3.0e-11 74.3 91 42.9
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.0e-11 73.9 129 38.0
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 6.8e-11 73.2 108 40.7
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 8.8e-11 72.8 197 26.9
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 2.6e-10 71.2 179 30.7
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.2e-09 68.2 55 43.6
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 6.3e-09 66.6 43 58.1
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 1.1e-08 65.9 138 44.2
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.1e-08 65.9 134 32.1
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 2.9e-06 57.8 126 28.6


User provided reference genes

Program Settings