Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.44PPB6 Arachis hypogaea HOM05D000257 ORTHO05D087274 1.4e-57 226.1 113 100.0
arahy.Tifrunner.gnm1.ann1.2YI87A Arachis hypogaea HOM05D000257 ORTHO05D008537 3.4e-32 141.7 71 100.0
arahy.Tifrunner.gnm1.ann1.3NQZ3H Arachis hypogaea HOM05D000257 ORTHO05D008537 9.8e-24 113.6 74 79.7
Lalb_Chr06g0161541 Lupinus albus HOM05D000257 ORTHO05D008537 1.3e-20 103.2 72 77.8
arahy.Tifrunner.gnm1.ann1.49R5B9 Arachis hypogaea HOM05D000257 ORTHO05D008537 8.9e-17 90.5 57 82.5
Medtr1g019170 Medicago truncatula HOM05D000257 ORTHO05D008537 1.2e-16 90.1 77 66.2
Medtr1g098960 Medicago truncatula HOM05D000257 ORTHO05D008537 1.2e-16 90.1 77 66.2
Medtr3g029990 Medicago truncatula HOM05D000257 ORTHO05D008537 1.2e-16 90.1 77 67.5
Medtr3g030020 Medicago truncatula HOM05D000257 ORTHO05D008537 1.2e-16 90.1 77 67.5
VMungo0720G2143 Vigna mungo HOM05D000257 ORTHO05D008537 7.5e-16 87.4 73 67.1
Phvul.007G079300 Phaseolus vulgaris HOM05D000257 ORTHO05D008537 1.7e-15 86.3 71 66.2
Medtr3g448960 Medicago truncatula HOM05D000257 ORTHO05D008537 1.6e-13 79.7 72 63.9
Sc20g0003500 Simmondsia chinensis HOM05D000257 ORTHO05D008537 1.6e-13 79.7 71 60.6
Psat6g193240 Pisum sativum HOM05D000257 ORTHO05D008537 1.0e-12 77.0 81 56.8
Prupe.8G028100 Prunus persica HOM05D000257 ORTHO05D008537 1.7e-12 76.3 71 57.7
AUR62013569 Chenopodium quinoa HOM05D000257 ORTHO05D008537 3.9e-12 75.1 71 53.5
Duzib041G0286 Durio zibethinus HOM05D000257 ORTHO05D008537 5.0e-12 74.7 71 59.2
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 6.6e-12 74.3 80 56.2
AUR62026720 Chenopodium quinoa HOM05D000257 ORTHO05D008537 1.9e-11 72.8 71 52.1
COL.COLO4_37838 Corchorus olitorius HOM05D000257 ORTHO05D008537 2.5e-11 72.4 72 59.7
Haze_17745 Corylus avellana HOM05D000257 ORTHO05D008537 2.5e-11 72.4 71 60.6
THA.LOC104816759 Tarenaya hassleriana HOM05D000257 ORTHO05D008537 2.5e-11 72.4 74 52.7
Glyma.10G225700 Glycine max HOM05D000257 ORTHO05D008537 3.3e-11 72.0 74 59.5
Ah.05g167850 Amaranthus hybridus HOM05D000257 ORTHO05D008537 4.3e-11 71.6 71 54.9
Potri.005G191100 Populus trichocarpa HOM05D000257 ORTHO05D008537 4.3e-11 71.6 71 54.9
RcHm_v2.0_Chr6g0275671 Rosa chinensis HOM05D000257 ORTHO05D008537 4.3e-11 71.6 71 59.2
MD05G1023500 Malus domestica HOM05D000257 ORTHO05D008537 7.3e-11 70.9 71 57.7
Peaxi162Scf00765g00018 Petunia axillaris HOM05D000257 ORTHO05D008537 7.3e-11 70.9 71 56.3
PGR042G3587 Punica granatum HOM05D000257 ORTHO05D008537 7.3e-11 70.9 71 56.3
Aa31LG11G14010 Aethionema arabicum HOM05D000257 ORTHO05D008537 9.5e-11 70.5 71 52.1
Nitab4.5_0000032g0050 Nicotiana tabacum HOM05D000257 ORTHO05D008537 9.5e-11 70.5 71 53.5
Atru.chr13.2156 Acer truncatum HOM05D000257 ORTHO05D008537 1.2e-10 70.1 71 56.3
Dinv26364 Davidia involucrata HOM05D000257 ORTHO05D008537 1.2e-10 70.1 71 54.9
Lj5g0018709 Lotus japonicus HOM05D000257 ORTHO05D008537 1.2e-10 70.1 71 57.7
Thecc.08G149700 Theobroma cacao HOM05D000257 ORTHO05D008537 1.2e-10 70.1 71 57.7
AL4G26520 Arabidopsis lyrata HOM05D000257 ORTHO05D008537 1.6e-10 69.7 71 50.7
AT2G31290 Arabidopsis thaliana HOM05D000257 ORTHO05D008537 1.6e-10 69.7 71 50.7
Cfa018331 Carpinus fangiana HOM05D000257 ORTHO05D008537 1.6e-10 69.7 71 60.6
Ca_27731_v3 Cicer arietinum L. HOM05D000257 ORTHO05D008537 1.6e-10 69.7 79 54.4
Nitab4.5_0004790g0030 Nicotiana tabacum HOM05D000257 ORTHO05D008537 1.6e-10 69.7 71 53.5
Sed0024568 Sechium edule HOM05D000257 ORTHO05D008537 1.6e-10 69.7 71 52.1
CiPaw.16G013600 Carya illinoinensis HOM05D000257 ORTHO05D008537 2.1e-10 69.3 71 52.1
CSS0036500 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D008537 2.8e-10 68.9 71 52.1
Migut.H02335 Erythranthe guttata HOM05D000257 ORTHO05D008537 2.8e-10 68.9 71 57.7
QL02p073939 Quercus lobata HOM05D000257 ORTHO05D008537 2.8e-10 68.9 71 57.7
Cc10_g14720 Coffea canephora HOM05D000257 ORTHO05D008537 3.6e-10 68.6 72 55.6
PGSC0003DMG400008616 Solanum tuberosum HOM05D000257 ORTHO05D008537 3.6e-10 68.6 71 52.1
BcaNung00107 Brassica carinata HOM05D000257 ORTHO05D008537 4.7e-10 68.2 71 50.7
CAN.G905.15 Capsicum annuum HOM05D000257 ORTHO05D008537 4.7e-10 68.2 71 50.7
Cpa.g.sc21.189 Carica papaya HOM05D000257 ORTHO05D008537 4.7e-10 68.2 72 52.8
Actinidia17800 Actinidia chinensis HOM05D000257 ORTHO05D008537 6.2e-10 67.8 71 49.3
Nn5g28718 Nelumbo nucifera HOM05D000257 ORTHO05D008537 8.1e-10 67.4 71 50.7
Sabra05G0146000 Salix brachista HOM05D000257 ORTHO05D008537 8.1e-10 67.4 71 56.3
Sp7g16930 Schrenkiella parvula HOM05D000257 ORTHO05D008537 8.1e-10 67.4 71 49.3
Lj4E695T0 Lonicera japonica HOM05D000257 ORTHO05D008537 1.1e-09 67.0 71 53.5
Ciclev10001289m.g Citrus clementina HOM05D000257 ORTHO05D008537 1.4e-09 66.6 71 54.9
Thhalv10027159m.g Eutrema salsugineum HOM05D000257 ORTHO05D008537 1.4e-09 66.6 71 49.3
Lsat_1_v5_gn_5_89920 Lactuca sativa HOM05D000257 ORTHO05D008537 1.8e-09 66.2 71 52.1
Rhsim06G0026600 Rhododendron simsii HOM05D000257 ORTHO05D008537 1.8e-09 66.2 71 49.3
CARHR223930 Cardamine hirsuta HOM05D000257 ORTHO05D008537 2.3e-09 65.9 71 49.3
TAR381G1141 Trochodendron aralioides HOM05D000257 ORTHO05D008537 2.3e-09 65.9 71 47.9
FvH4_2g13920 Fragaria vesca HOM05D000257 ORTHO05D008537 4.0e-09 65.1 71 52.1
Gohir.A02G064400 Gossypium hirsutum HOM05D000257 ORTHO05D008537 4.0e-09 65.1 71 54.9
Gohir.D02G070350 Gossypium hirsutum HOM05D000257 ORTHO05D008537 4.0e-09 65.1 71 54.9
Gorai.005G079400 Gossypium raimondii HOM05D000257 ORTHO05D008537 4.0e-09 65.1 71 54.9
BcaC09g50458 Brassica carinata HOM05D000257 ORTHO05D008537 5.2e-09 64.7 72 50.0
Manes.13G038100 Manihot esculenta HOM05D000257 ORTHO05D008537 5.2e-09 64.7 71 50.7
Eucgr.B00984 Eucalyptus grandis HOM05D000257 ORTHO05D008537 1.2e-08 63.5 71 50.7
Actinidia10654 Actinidia chinensis HOM05D000257 ORTHO05D008537 1.5e-08 63.2 71 49.3
Carub.0004s1258 Capsella rubella HOM05D000257 ORTHO05D008537 1.5e-08 63.2 71 47.9
CsaV3_6G005280 Cucumis sativus L. HOM05D000257 ORTHO05D008537 1.5e-08 63.2 71 47.9
EL10Ac3g05262 Beta vulgaris HOM05D000257 ORTHO05D008537 2.0e-08 62.8 71 50.7
Sopen04g027240 Solanum pennellii HOM05D000257 ORTHO05D008537 2.0e-08 62.8 71 47.9
Oeu031093.1 Olea europaea HOM05D000257 ORTHO05D008537 2.6e-08 62.4 71 52.1
ClCG08G006950 Citrullus lanatus HOM05D000257 ORTHO05D008537 3.4e-08 62.0 71 50.7
Eucgr.B00887 Eucalyptus grandis HOM05D000257 ORTHO05D008537 4.4e-08 61.6 71 49.3
SalBow7G3302 Salvia bowleyana HOM05D000257 ORTHO05D008537 5.8e-08 61.2 75 49.3
ECA246G2106 Erigeron canadensis HOM05D000257 ORTHO05D008537 7.5e-08 60.8 72 50.0
Hma1.2p1_0105F.1_g050820 Hydrangea macrophylla HOM05D000257 ORTHO05D008537 9.9e-08 60.5 71 50.7
MBI19_g25017_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D008537 2.2e-07 59.3 71 46.5
SGA_v2.0_scaffold6G03201 Striga asiatica HOM05D000257 ORTHO05D008537 2.2e-07 59.3 70 48.6
HanXRQChr05g0161571 Helianthus annuus HOM05D000257 ORTHO05D008537 2.9e-07 58.9 72 45.8
A01p20110 Brassica napus HOM05D000257 ORTHO05D008537 3.7e-07 58.5 75 48.0
BraA01t01935Z Brassica rapa HOM05D000257 ORTHO05D008537 3.7e-07 58.5 75 48.0
C01p25260 Brassica napus HOM05D000257 ORTHO05D008537 6.4e-07 57.8 74 47.3
BolC1t02476H Brassica oleracea HOM05D000257 ORTHO05D008537 6.4e-07 57.8 74 47.3
MSTRG.560 Avicennia marina HOM05D000257 ORTHO05D008537 1.1e-06 57.0 71 52.1
CAN.G231.29 Capsicum annuum HOM05D000257 ORTHO05D008537 1.4e-06 56.6 71 45.1
DCAR_016345 Daucus carota HOM05D000257 ORTHO05D008537 1.4e-06 56.6 71 46.5
FAN15G3320 Fragaria x ananassa HOM05D000257 ORTHO05D008537 1.9e-06 56.2 68 47.1
FAN20G0765 Fragaria x ananassa HOM05D000257 ORTHO05D008537 1.9e-06 56.2 68 47.1
FAN24G0329 Fragaria x ananassa HOM05D000257 ORTHO05D008537 1.9e-06 56.2 68 47.1
FAN27G3100 Fragaria x ananassa HOM05D000257 ORTHO05D008537 1.9e-06 56.2 66 50.0
CsaV3_1G019690 Cucumis sativus L. HOM05D000257 ORTHO05D008537 5.4e-06 54.7 65 46.2


User provided reference genes

Program Settings