Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.3e-106 389.8 201 100.0
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-94 348.2 236 82.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 2.0e-72 276.2 201 72.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.0e-68 263.8 200 70.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.4e-68 263.5 201 68.7
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.3e-63 246.1 203 66.0
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-62 243.8 160 83.8
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 6.6e-55 218.0 223 56.1
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.4e-52 210.3 154 72.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.5e-46 189.5 195 52.8
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.6e-45 186.8 191 57.1
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.6e-45 186.8 195 53.8
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 6.2e-45 184.9 202 53.0
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-44 183.7 211 50.2
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.8e-44 183.3 194 55.2
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.0e-44 182.2 162 60.5
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.2e-43 180.6 157 61.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.6e-43 179.5 142 65.5
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.6e-43 179.5 212 51.4
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.4e-43 178.7 154 63.0
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 5.8e-43 178.3 182 58.2
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 5.8e-43 178.3 184 55.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.3e-42 177.2 149 61.7
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.9e-42 175.3 201 50.2
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.4e-41 172.9 158 60.8
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.2e-41 172.6 206 50.0
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.2e-41 172.6 206 50.0
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 3.2e-41 172.6 176 54.5
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.2e-40 170.6 187 52.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.2e-40 170.6 183 54.1
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-40 170.6 195 51.8
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 3.5e-40 169.1 141 62.4
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.5e-40 169.1 210 49.0
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.5e-40 169.1 211 49.3
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.5e-40 169.1 156 59.0
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 4.6e-40 168.7 146 61.6
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 6.0e-40 168.3 199 48.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.3e-39 167.2 164 54.9
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.1e-39 165.2 151 62.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.1e-39 165.2 140 60.7
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 8.6e-39 164.5 158 59.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.1e-38 164.1 183 52.5
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 2.5e-38 162.9 171 49.7
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.3e-38 162.2 126 64.3
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 5.6e-38 161.8 158 58.9
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 7.3e-38 161.4 221 44.8
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.2e-37 160.6 203 47.8
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.7e-37 158.7 131 64.1
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.7e-37 158.7 189 54.0
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.1e-36 157.5 158 53.2
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-36 156.8 205 50.2
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 4.0e-36 155.6 176 48.9
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 6.8e-36 154.8 146 56.2
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.0e-35 153.3 174 48.9
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.6e-35 152.9 143 53.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 4.4e-35 152.1 174 50.0
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 4.4e-35 152.1 171 48.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 5.8e-35 151.8 172 47.7
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 7.5e-35 151.4 172 47.7
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.7e-34 150.2 157 51.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.7e-34 150.2 201 44.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.2e-34 149.8 201 42.8
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.9e-34 149.4 171 46.2
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.9e-34 149.4 191 42.4
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 8.3e-34 147.9 128 62.5
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.1e-33 147.5 114 62.3
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.2e-32 144.1 126 58.7
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 6.0e-32 141.7 160 46.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 7.8e-32 141.4 126 55.6
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.0e-31 141.0 132 53.8
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.7e-31 140.2 163 50.3
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.6e-31 138.3 138 54.3
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 8.6e-31 137.9 121 57.9
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 1.9e-30 136.7 147 49.7
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.1e-29 133.3 223 39.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.1e-29 131.3 163 52.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.0e-27 126.7 130 52.3
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 2.0e-27 126.7 152 48.0
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 5.8e-27 125.2 90 71.1
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.3e-23 113.2 204 37.7
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.5e-22 110.5 74 75.7
arahy.Tifrunner.gnm1.ann1.D1V4I4 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.3e-22 109.0 98 60.2
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 6.2e-21 105.1 168 35.1
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.1e-20 104.4 172 36.6
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.4e-20 104.0 153 40.5
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.4e-20 104.0 172 36.6
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.8e-20 103.6 159 36.5
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.4e-20 103.2 129 55.8
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 3.1e-20 102.8 124 40.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 3.1e-20 102.8 125 40.8
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 4.0e-20 102.4 165 36.4
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 5.3e-20 102.1 144 39.6
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 5.3e-20 102.1 143 37.8
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.5e-19 100.5 153 37.3
arahy.Tifrunner.gnm1.ann1.IM3V03 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.6e-19 99.8 53 92.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 3.4e-19 99.4 143 35.7
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.4e-19 99.0 119 41.2
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 5.8e-19 98.6 127 37.8
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 5.8e-19 98.6 151 37.7
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.8e-19 98.6 144 38.9
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 7.6e-19 98.2 204 31.4
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 7.6e-19 98.2 145 36.6
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 9.9e-19 97.8 153 37.3
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 9.9e-19 97.8 143 35.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.3e-18 97.4 144 38.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-18 97.4 145 37.9
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.3e-18 97.4 145 36.6
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.3e-18 97.4 149 36.9
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-18 97.1 144 37.5
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.9e-18 96.3 131 38.9
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 3.8e-18 95.9 145 35.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.8e-18 95.9 160 37.5
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.8e-18 95.9 143 36.4
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.8e-18 95.9 120 40.0
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 4.9e-18 95.5 145 35.2
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 6.4e-18 95.1 125 38.4
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.4e-18 95.1 120 39.2
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 8.4e-18 94.7 115 38.3
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 8.4e-18 94.7 120 39.2
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 8.4e-18 94.7 125 41.6
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-17 94.4 126 38.9
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 2.4e-17 93.2 124 39.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.2e-17 92.8 112 44.6
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 3.2e-17 92.8 150 34.0
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 3.2e-17 92.8 152 34.9
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 4.2e-17 92.4 124 36.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.2e-17 92.4 152 36.2
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.2e-17 92.4 159 34.6
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 5.4e-17 92.0 119 40.3
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 5.4e-17 92.0 118 38.1
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 7.1e-17 91.7 146 37.7
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 9.3e-17 91.3 213 27.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.6e-16 90.5 142 35.2
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.1e-16 90.1 119 35.3
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 6.0e-16 88.6 143 34.3
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 7.8e-16 88.2 142 35.2
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-15 87.8 119 35.3
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.0e-15 87.8 144 34.0
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.3e-15 87.4 131 40.5
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.3e-15 86.7 142 35.2
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 3.9e-15 85.9 119 40.3
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.1e-15 85.5 82 48.8
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 5.1e-15 85.5 111 39.6
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 5.1e-15 85.5 159 31.4
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.6e-15 85.1 158 31.6
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.9e-14 83.6 150 32.7
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 4.3e-14 82.4 150 32.7
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 9.6e-14 81.3 139 38.8
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.1e-13 80.1 89 53.9
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.8e-13 79.7 91 44.0
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.8e-13 79.7 59 66.1
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.8e-13 79.7 59 66.1
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 8.1e-13 78.2 121 35.5
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.1e-12 77.8 226 27.9
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.5e-11 73.9 140 32.1
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 2.6e-11 73.2 141 31.9
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 3.4e-11 72.8 128 35.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.4e-11 72.8 141 31.9
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.8e-11 72.0 129 35.7
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 5.8e-11 72.0 180 27.8
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 7.6e-11 71.6 102 37.3
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 9.9e-11 71.2 103 36.9
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.3e-10 70.9 138 33.3
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.9e-10 69.7 93 44.1
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 7.9e-08 61.6 146 28.1
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 1.5e-06 57.4 39 69.2


User provided reference genes

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