Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.3e-255 885.2 489 100.0
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.0e-186 657.1 418 90.2
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.5e-97 360.9 439 54.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.3e-96 357.8 442 52.3
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 7.1e-95 352.1 439 52.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 7.1e-95 352.1 435 52.0
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.7e-94 350.1 441 52.6
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.7e-94 350.1 441 53.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 5.3e-90 335.9 441 51.2
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.3e-82 309.3 436 46.8
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.5e-81 306.2 430 47.4
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 7.6e-81 305.4 434 46.5
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.7e-80 304.3 436 47.0
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.2e-80 303.9 434 46.3
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.1e-79 301.6 439 49.7
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.4e-79 300.4 425 48.2
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.5e-79 299.3 432 46.8
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.5e-78 296.6 438 47.0
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.0e-77 295.0 434 44.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.8e-77 294.3 433 46.7
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 8.7e-77 292.0 440 46.6
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.9e-76 290.8 431 44.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 5.6e-76 289.3 438 47.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 7.4e-76 288.9 436 46.8
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 9.6e-76 288.5 434 46.3
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.4e-74 283.9 430 45.8
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 1.7e-72 277.7 433 44.3
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.9e-72 276.2 504 41.1
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.9e-71 274.2 428 45.6
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.2e-71 273.1 429 44.1
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.5e-70 270.0 438 42.5
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 6.0e-70 269.2 422 44.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 7.9e-70 268.9 438 45.2
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 5.1e-69 266.2 434 45.9
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 3.3e-68 263.5 306 51.0
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 5.7e-68 262.7 442 42.5
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.3e-67 261.5 431 42.2
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.3e-67 261.5 431 42.2
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 3.1e-66 256.9 438 41.8
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 6.9e-66 255.8 433 39.5
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.0e-65 254.2 426 44.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 4.5e-65 253.1 419 43.2
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 4.5e-65 253.1 424 43.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 4.5e-65 253.1 437 40.3
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.0e-64 251.9 440 43.9
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.2e-64 250.8 432 42.4
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.0e-64 249.6 438 42.5
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 6.5e-64 249.2 438 39.3
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.2e-63 246.5 437 41.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 7.2e-63 245.7 429 42.7
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 7.2e-63 245.7 437 40.0
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.6e-62 244.6 423 43.3
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.1e-62 244.2 437 40.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 2.1e-62 244.2 437 40.5
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.6e-62 243.4 430 41.4
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 6.1e-62 242.7 433 40.2
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.3e-61 241.5 425 41.6
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.3e-61 240.7 445 39.1
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.7e-61 239.2 437 40.3
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.7e-61 239.2 433 39.7
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-60 238.4 447 38.9
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-60 238.0 443 40.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.5e-60 238.0 439 38.7
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.9e-60 237.7 427 39.6
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 3.3e-60 236.9 441 39.7
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.3e-60 236.5 445 39.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 7.4e-60 235.7 442 38.9
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.6e-59 234.6 426 41.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.2e-59 234.2 442 38.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-59 233.8 437 39.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.1e-58 231.9 443 39.1
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.2e-57 228.4 438 40.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.5e-57 228.0 401 42.4
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.7e-56 224.6 438 38.6
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 5.0e-56 223.0 434 38.0
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.2e-55 220.3 431 36.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.2e-55 219.9 424 36.8
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 9.4e-55 218.8 434 37.3
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.7e-54 217.2 424 37.3
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 6.1e-54 216.1 442 38.2
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 7.9e-54 215.7 422 36.5
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 7.9e-54 215.7 424 36.3
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 5.7e-52 209.5 434 36.6
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 7.4e-52 209.1 431 38.5
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 7.4e-52 209.1 425 36.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-51 208.4 427 34.9
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 3.1e-50 203.8 420 36.2
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 9.1e-50 202.2 420 36.9
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 3.4e-49 200.3 438 40.4
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.5e-49 199.9 428 37.4
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 5.0e-48 196.4 418 36.4
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 5.0e-48 196.4 227 51.1
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.4e-47 194.9 437 37.3
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.5e-47 194.1 436 35.8
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 4.2e-47 193.4 436 35.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.2e-47 193.4 429 34.5
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 7.2e-47 192.6 392 37.2
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.6e-46 191.4 450 37.1
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.3e-45 187.6 214 50.5
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.4e-42 178.3 247 44.9
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.5e-41 173.7 237 44.7
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.3e-40 171.8 420 32.6
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.9e-39 167.9 210 45.7
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.6e-38 164.9 420 34.0
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 4.7e-38 163.3 432 33.3
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.0e-37 162.2 226 44.2
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.4e-37 161.8 415 34.5
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.0e-37 160.6 340 40.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.5e-36 158.3 442 32.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.3e-36 157.1 227 43.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.1e-34 152.1 401 33.2
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.6e-33 148.3 218 42.7
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 7.7e-33 146.0 422 31.8
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.0e-32 145.6 215 41.4
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 1.7e-32 144.8 214 42.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 6.5e-32 142.9 226 41.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 1.9e-31 141.4 163 47.2
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 5.5e-31 139.8 216 40.3
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.0e-29 135.6 413 32.4
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.4e-28 130.6 112 60.7
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.4e-28 130.2 215 39.1
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 7.5e-28 129.4 219 38.4
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 2.4e-26 124.4 422 27.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 9.1e-26 122.5 238 34.5
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.2e-25 122.1 123 54.5
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 8.8e-21 105.9 100 66.0
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 2.8e-19 100.9 278 37.8
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 2.1e-14 84.7 179 31.3
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.1e-14 84.7 179 35.8
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.7e-14 83.6 179 35.2
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.4e-13 82.0 219 31.5
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.4e-12 77.4 177 32.8
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 9.8e-12 75.9 93 49.5
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.2e-09 68.9 180 30.0
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.6e-09 67.0 142 35.9
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.3e-08 64.7 184 29.3
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 9.5e-07 59.3 182 27.5
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 6.2e-06 56.6 116 36.2
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 8.0e-06 56.2 91 40.7
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 8.0e-06 56.2 91 40.7
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 8.0e-06 56.2 91 40.7
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 8.0e-06 56.2 91 40.7
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 8.0e-06 56.2 91 40.7


User provided reference genes

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