Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-189 666.0 349 100.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-189 666.0 349 100.0
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.9e-163 579.3 349 89.7
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.9e-163 579.3 349 89.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 6.9e-153 544.3 298 90.3
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 4.8e-146 521.5 286 90.6
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 2.7e-141 505.8 278 90.3
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.6e-139 499.2 299 85.6
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 1.3e-138 496.9 324 81.5
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.3e-138 494.6 314 85.0
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 8.2e-138 494.2 280 87.5
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 8.2e-138 494.2 280 87.5
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 8.2e-138 494.2 280 87.5
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 4.1e-137 491.9 288 87.2
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-136 489.2 280 86.4
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 5.9e-136 488.0 299 83.9
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.0e-135 485.0 297 83.5
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.5e-134 482.6 286 86.4
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 4.2e-134 481.9 298 83.2
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 3.4e-131 472.2 260 90.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 7.5e-131 471.1 288 84.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.3e-130 468.0 288 83.7
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.0e-128 463.0 297 81.1
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 5.9e-128 461.5 260 88.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 2.5e-126 456.1 297 80.8
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 4.7e-125 451.8 286 82.5
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.5e-123 446.8 288 80.2
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.6e-123 446.0 288 81.6
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 4.4e-123 445.3 260 87.7
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.7e-122 443.4 286 81.1
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 8.3e-122 441.0 292 82.9
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 8.3e-122 441.0 283 81.3
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.0e-121 438.0 285 80.0
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.2e-120 437.2 286 81.1
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 1.3e-119 433.7 287 79.1
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 3.8e-119 432.2 299 77.9
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 6.6e-119 431.4 276 81.2
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 6.1e-117 424.9 286 83.2
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 3.4e-115 419.1 314 72.9
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 5.7e-115 418.3 260 82.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.5e-115 417.9 288 76.7
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.3e-114 417.2 287 77.7
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.4e-113 412.9 265 81.9
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 7.0e-113 411.4 252 90.9
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.0e-112 409.8 290 75.9
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 2.7e-112 409.5 232 87.5
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 5.0e-111 405.2 280 75.0
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 5.0e-111 405.2 280 75.0
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 5.0e-111 405.2 280 75.0
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 5.0e-111 405.2 280 75.0
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 5.0e-111 405.2 280 75.0
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 5.0e-111 405.2 280 75.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.1e-109 399.8 269 77.7
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.4e-108 397.1 264 79.9
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.4e-108 397.1 264 79.9
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.4e-108 397.1 264 79.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.8e-108 396.7 261 80.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-107 394.0 264 79.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.2e-107 394.0 264 79.5
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 7.5e-107 391.3 260 80.4
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-105 387.5 259 78.0
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 3.5e-104 382.5 282 73.8
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.3e-103 379.8 287 71.1
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.1e-100 370.9 232 82.8
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 2.5e-94 349.7 231 80.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.1e-93 346.7 282 67.4
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-89 332.8 260 75.0
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 3.2e-89 332.8 260 75.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.3e-86 322.8 288 62.8
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-76 291.2 208 75.0
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 2.2e-74 283.5 181 82.3
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 8.4e-74 281.6 252 63.5
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.9e-70 270.4 182 78.0
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.6e-70 268.9 286 54.9
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 8.4e-66 255.0 239 63.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 6.0e-64 248.8 175 75.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.1e-62 244.6 271 53.5
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 9.6e-62 241.5 161 79.5
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.4e-60 237.7 138 88.4
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.0e-58 231.5 140 85.0
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.6e-56 222.6 125 87.2
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-54 218.0 200 63.5
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.6e-53 214.2 120 88.3
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 5.3e-52 209.1 151 74.8
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-51 208.0 133 81.2
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.5e-50 202.2 124 79.0
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 2.3e-47 193.7 119 83.2
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 1.1e-44 184.9 113 79.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.1e-44 183.3 114 80.7
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 4.1e-44 183.0 87 100.0
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.0e-42 176.0 106 84.9
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.4e-41 174.5 107 83.2
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.2e-41 172.2 143 64.3
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-36 158.3 102 80.4
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 1.1e-36 158.3 102 80.4
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.8e-36 157.5 131 67.2
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.2e-34 150.6 96 80.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 6.5e-34 149.1 94 80.9
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-33 148.3 133 60.2
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 5.5e-33 146.0 93 79.6
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 3.6e-32 143.3 93 79.6
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.6e-27 127.9 64 95.3
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.9e-26 123.6 70 82.9
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-23 113.6 157 45.9
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.3e-22 110.2 59 89.8
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 6.3e-21 105.9 75 68.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.3e-20 102.8 59 81.4
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 3.2e-17 93.6 66 68.2
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 7.2e-17 92.4 74 62.2
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 6.1e-16 89.4 45 93.3
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 8.8e-15 85.5 83 57.8
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 2.2e-13 80.9 74 62.2
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.7e-13 80.1 50 78.0
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 6.3e-13 79.3 48 81.2
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-12 78.6 80 56.2
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 4.1e-12 76.6 46 76.1
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 1.6e-11 74.7 67 61.2
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 4.2e-09 66.6 83 48.2
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 3.6e-08 63.5 69 53.6
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-07 60.5 32 81.2
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-07 60.5 32 81.2
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 3.0e-07 60.5 32 81.2
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 1.2e-06 58.5 29 89.7


User provided reference genes

Program Settings