Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 3.5e-266 921.0 444 100.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 4.7e-263 910.6 444 98.9
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.4e-203 713.0 444 75.7
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 5.1e-201 704.5 442 74.7
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 7.4e-200 700.7 445 74.4
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 4.9e-196 688.0 444 72.7
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 9.3e-195 683.7 444 72.1
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 3.7e-191 671.8 446 70.9
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 1.1e-190 670.2 420 75.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 2.1e-186 656.0 447 69.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 3.3e-184 648.7 444 68.5
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 3.8e-180 635.2 444 68.0
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 4.2e-179 631.7 446 66.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.2e-178 630.2 444 67.8
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.8e-177 626.3 442 67.4
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.7e-176 621.3 444 64.9
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 6.3e-175 617.8 427 68.4
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.8e-174 616.3 444 64.6
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 5.9e-173 611.3 444 63.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.3e-172 610.1 444 66.4
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.7e-172 609.8 444 64.2
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.9e-172 609.0 444 64.6
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.4e-171 606.7 444 64.4
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.9e-171 606.3 444 64.0
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.9e-171 606.3 444 64.0
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 5.5e-171 604.7 475 62.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 7.2e-171 604.4 443 63.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 9.4e-171 604.0 443 64.8
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.6e-170 603.2 443 65.0
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 4.7e-170 601.7 444 63.1
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 8.0e-170 600.9 444 63.1
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 8.0e-170 600.9 444 64.9
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-169 600.5 444 62.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 1.8e-169 599.7 447 64.7
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 1.8e-169 599.7 444 62.8
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 3.0e-169 599.0 456 62.1
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 3.9e-169 598.6 444 62.4
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.3e-168 595.5 444 63.1
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.3e-168 595.5 444 63.7
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.4e-168 595.1 444 64.2
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.4e-168 595.1 447 64.4
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 7.4e-168 594.3 443 64.6
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 9.7e-168 594.0 444 63.1
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.7e-167 593.2 442 64.0
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.7e-167 593.2 444 63.1
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-167 592.8 446 61.9
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 6.3e-167 591.3 442 63.3
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.8e-166 589.7 381 72.7
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 3.1e-166 589.0 405 69.4
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 5.3e-166 588.2 445 61.6
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 3.5e-165 585.5 489 58.1
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 4.5e-165 585.1 446 61.2
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 4.5e-165 585.1 445 61.3
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 5.9e-165 584.7 444 61.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 1.3e-164 583.6 444 62.6
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 2.2e-164 582.8 446 60.5
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 3.8e-164 582.0 444 61.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 6.5e-164 581.3 446 61.2
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.1e-163 580.5 445 61.1
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.2e-163 577.8 445 60.4
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 2.1e-162 576.2 443 61.2
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.1e-162 576.2 445 61.3
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 3.6e-162 575.5 418 65.1
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.7e-162 575.1 444 60.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 6.7e-161 571.2 444 59.5
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 3.3e-160 568.9 444 58.8
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.4e-160 568.5 444 60.8
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 2.7e-157 559.3 445 58.4
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 5.9e-157 558.1 444 58.1
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.7e-156 556.6 444 60.4
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 5.0e-156 555.1 444 59.5
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 6.5e-156 554.7 445 57.3
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 2.5e-155 552.7 444 59.2
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 3.6e-154 548.9 444 59.0
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 3.6e-154 548.9 444 59.0
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 4.0e-153 545.4 445 58.4
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 4.0e-153 545.4 445 58.4
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 6.8e-153 544.7 444 58.8
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.5e-152 543.5 444 57.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 3.4e-152 542.3 445 57.5
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.7e-152 541.6 444 57.9
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 7.5e-152 541.2 383 66.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 6.3e-151 538.1 441 58.7
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 8.3e-151 537.7 460 56.1
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 2.4e-150 536.2 445 59.1
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 3.5e-149 532.3 401 62.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 5.0e-148 528.5 444 56.3
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.4e-145 520.4 444 58.8
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.0e-145 519.2 419 61.1
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.6e-144 516.2 364 66.5
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 7.5e-144 514.6 364 67.3
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 2.2e-143 513.1 439 58.8
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 5.4e-142 508.4 382 64.7
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 4.0e-137 492.3 444 52.9
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 5.2e-137 491.9 444 52.5
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 1.1e-134 484.2 444 53.8
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 1.1e-134 484.2 451 54.3
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.9e-134 483.4 444 54.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.7e-133 479.6 367 62.1
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 7.8e-133 478.0 386 58.8
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 8.0e-130 468.0 445 52.6
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 8.0e-130 468.0 445 52.6
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 8.0e-130 468.0 445 52.6
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 5.2e-129 465.3 446 52.0
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 3.2e-126 456.1 444 53.6
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 5.6e-123 445.3 324 64.5
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.6e-122 443.7 447 50.6
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.9e-119 432.2 465 48.0
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 6.4e-119 431.8 417 52.0
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 8.3e-119 431.4 445 49.4
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 7.3e-115 418.3 437 50.3
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 7.3e-115 418.3 458 46.9
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 2.7e-101 373.2 308 59.7
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 1.7e-100 370.5 448 42.4
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 5.6e-99 365.5 446 45.5
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 1.1e-97 361.3 309 56.6
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 3.1e-97 359.8 231 71.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 4.0e-97 359.4 358 53.6
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 3.2e-94 349.7 436 40.6
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 9.6e-91 338.2 444 40.1
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 8.1e-90 335.1 382 47.1
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 2.6e-88 330.1 446 42.8
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 2.9e-87 326.6 415 40.7
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.2e-86 323.2 438 40.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.7e-85 320.1 245 61.2
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 4.3e-83 312.8 446 39.9
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.1e-78 295.4 184 73.9
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.5e-71 272.3 231 60.2
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 8.5e-71 271.9 316 46.5
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 9.1e-57 225.3 482 32.6
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.2e-56 224.9 510 30.2
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.9e-55 220.3 144 70.8
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.8e-49 201.1 150 62.0
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 6.8e-36 156.0 137 54.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.1e-33 148.7 497 29.8
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-30 138.3 102 59.8
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 6.8e-28 129.4 93 66.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 1.1e-25 122.1 100 56.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 4.3e-22 110.2 72 65.3
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-11 75.1 69 50.7
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.3e-10 72.0 370 24.6
SMO202G0038 Selaginella moellendorffii HOM05D038926 ORTHO05D006432 1.0e-07 62.4 198 23.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.7e-07 61.6 136 32.4
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.0e-07 60.8 66 47.0
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 6.6e-07 59.7 136 34.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.5e-06 58.5 136 32.4
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.9e-06 58.2 136 32.4
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.9e-06 58.2 112 34.8
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 2.5e-06 57.8 136 33.8
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 5.6e-06 56.6 136 31.6
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 5.6e-06 56.6 136 32.4
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 5.6e-06 56.6 136 32.4
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 7.3e-06 56.2 112 35.7
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 7.3e-06 56.2 112 35.7


User provided reference genes

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