Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 2.8e-291 1004.6 528 100.0
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.2e-284 982.6 536 97.2
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 8.9e-253 876.7 544 84.6
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 1.1e-250 869.8 541 84.5
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 4.6e-249 864.4 547 81.2
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 6.0e-249 864.0 539 84.4
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 9.6e-247 856.7 544 83.5
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.2e-246 856.3 543 83.2
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 2.9e-243 845.1 540 82.8
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 6.4e-243 844.0 544 77.6
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.2e-242 841.6 536 81.5
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 9.3e-242 840.1 540 81.1
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.0e-241 837.4 544 81.4
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 3.0e-240 835.1 544 76.7
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 3.9e-240 834.7 543 81.4
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 8.7e-240 833.6 544 76.5
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.9e-239 832.4 540 77.2
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 2.8e-238 828.6 540 80.6
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 8.1e-238 827.0 540 81.1
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.8e-237 825.9 544 77.0
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 5.3e-237 824.3 539 79.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 6.9e-237 823.9 539 78.3
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 4.5e-236 821.2 547 75.7
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 9.9e-236 820.1 540 80.4
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 9.9e-236 820.1 540 80.4
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.2e-235 818.9 544 80.3
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 4.9e-235 817.8 545 76.0
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 4.9e-235 817.8 542 76.8
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 6.4e-235 817.4 540 80.2
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 6.4e-235 817.4 540 80.0
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 2.4e-234 815.5 546 78.8
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.4e-234 814.3 547 75.9
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 7.1e-234 813.9 546 78.6
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 2.7e-233 812.0 556 76.6
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 6.0e-233 810.8 542 79.9
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 6.0e-233 810.8 544 75.6
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 2.3e-232 808.9 536 77.2
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.5e-231 806.2 581 71.8
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.6e-230 802.7 540 79.4
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 1.1e-229 800.0 546 74.9
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 1.1e-229 800.0 539 79.2
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 5.3e-229 797.7 533 79.7
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 2.6e-228 795.4 544 73.0
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 3.4e-228 795.0 534 79.2
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.1e-226 790.0 536 76.5
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 3.2e-226 788.5 540 74.8
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 7.1e-226 787.3 597 68.5
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 9.3e-226 786.9 536 76.3
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 9.3e-226 786.9 597 68.3
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 1.2e-225 786.6 539 77.7
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 6.0e-225 784.3 540 75.9
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 6.0e-225 784.3 540 77.6
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 3.0e-224 781.9 544 75.4
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 6.7e-224 780.8 536 76.9
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 8.7e-224 780.4 544 74.6
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 1.1e-223 780.0 544 77.0
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 3.3e-223 778.5 544 74.1
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 4.3e-223 778.1 544 72.4
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 4.3e-223 778.1 544 72.4
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 4.3e-223 778.1 539 75.5
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 7.4e-223 777.3 537 72.6
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 1.6e-222 776.2 544 75.2
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 1.6e-222 776.2 544 73.5
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 3.7e-222 775.0 544 72.2
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 3.7e-222 775.0 544 72.2
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.1e-221 773.5 540 75.0
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.0e-221 771.5 540 74.1
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 4.0e-221 771.5 540 74.8
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 7.6e-220 767.3 544 74.3
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 2.9e-219 765.4 540 74.3
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 2.9e-219 765.4 542 73.6
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 9.3e-218 760.4 628 65.0
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 3.5e-217 758.4 570 70.5
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 5.1e-216 754.6 560 70.9
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 8.7e-216 753.8 537 71.7
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 1.9e-215 752.7 531 76.6
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 4.3e-215 751.5 544 73.3
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 9.7e-215 750.4 600 69.2
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.6e-214 749.6 534 72.3
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.4e-213 746.5 551 76.4
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 7.6e-212 740.7 538 71.0
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 3.9e-208 728.4 534 71.0
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.7e-203 713.0 547 68.4
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.1e-199 700.3 530 71.3
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.1e-197 693.7 530 66.6
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 4.5e-196 688.3 553 66.7
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 1.9e-194 682.9 454 80.0
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 2.1e-193 679.5 536 67.0
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 1.3e-190 670.2 512 69.3
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.5e-186 656.8 378 87.0
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 5.5e-186 654.8 746 51.1
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 9.7e-183 644.0 572 60.0
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.1e-178 630.6 530 63.6
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 3.6e-177 625.5 403 76.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 2.6e-175 619.4 545 65.3
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 4.8e-174 615.1 377 81.4
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 7.2e-170 601.3 363 81.0
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 6.3e-166 588.2 525 62.1
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.9e-157 560.1 536 53.7
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 1.9e-154 550.1 537 52.7
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 8.0e-153 544.7 441 64.9
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 1.5e-143 513.8 528 50.6
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 4.0e-136 489.2 383 68.7
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.2e-127 461.1 350 68.6
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 3.8e-126 456.1 496 49.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 8.7e-123 444.9 479 50.5
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 2.1e-121 440.3 314 65.3
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 9.9e-119 431.4 270 81.5
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.0e-115 421.4 275 76.0
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 5.6e-106 389.0 373 60.9
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 4.5e-103 379.4 220 81.4
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 7.6e-103 378.6 311 66.6
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 5.3e-96 355.9 266 68.0
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 3.2e-93 346.7 626 34.5
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 6.5e-70 269.2 395 39.2
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.1e-69 268.5 157 80.9
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 4.4e-66 256.5 154 85.1
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 3.5e-63 246.9 185 70.3
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.5e-61 240.7 152 77.6
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 3.6e-60 236.9 154 74.0
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 6.3e-57 226.1 166 66.3
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.1e-56 225.3 139 81.3
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.1e-56 223.8 479 32.2
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.6e-55 221.5 239 52.7
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.4e-51 208.4 152 73.0
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.8e-50 202.2 152 71.1
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 5.4e-48 196.4 409 31.8
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 7.0e-48 196.1 164 56.7
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 2.7e-47 194.1 794 23.0
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.6e-42 177.6 239 44.8
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.3e-41 175.3 109 81.7
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 3.9e-38 163.7 140 60.0
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 5.6e-37 159.8 232 39.2
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 6.2e-36 156.4 136 58.8
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 8.0e-36 156.0 85 90.6
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.3e-30 138.7 202 42.6
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.9e-29 134.8 115 66.1
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 7.6e-10 69.7 53 66.0
SGA_v2.0_scaffold16G07518 Striga asiatica HOM05D005139 ORTHO05D006125 6.0e-07 60.1 123 30.9
Carub.0002s1494 Capsella rubella HOM05D001168 ORTHO05D001044 5.1e-06 57.0 44 65.9
ClCG07G010240 Citrullus lanatus HOM05D005139 ORTHO05D006125 6.6e-06 56.6 70 51.4


User provided reference genes

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