Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 2.3e-193 678.7 333 100.0
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.1e-102 375.9 353 60.6
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.0e-101 373.2 353 60.3
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.2e-61 241.1 351 42.2
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 1.0e-60 238.0 277 49.5
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 3.0e-60 236.5 282 49.3
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 6.6e-60 235.3 279 47.3
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 5.6e-59 232.3 296 44.6
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 9.5e-59 231.5 282 46.1
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 9.5e-59 231.5 289 45.0
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 2.8e-58 229.9 278 45.7
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 4.4e-56 222.6 277 46.9
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 9.8e-56 221.5 284 44.0
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.1e-54 218.0 282 43.6
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 1.1e-54 218.0 288 44.1
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.1e-54 218.0 284 44.0
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 4.1e-54 216.1 365 36.7
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 7.8e-53 211.8 273 45.1
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 1.0e-52 211.5 273 45.1
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 2.3e-52 210.3 350 37.7
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 3.9e-52 209.5 351 37.9
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 3.9e-52 209.5 352 37.2
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.6e-52 208.8 351 34.8
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 1.1e-51 208.0 287 41.5
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.5e-51 207.6 344 35.2
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 3.3e-51 206.5 273 45.1
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 9.5e-51 204.9 290 41.7
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 9.5e-51 204.9 290 41.7
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 3.6e-50 203.0 290 41.4
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.7e-50 202.6 278 41.4
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.2e-49 199.1 290 41.0
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 8.9e-49 198.4 351 35.0
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 7.6e-48 195.3 287 40.4
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.3e-47 194.5 286 38.5
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 1.7e-47 194.1 350 34.6
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.7e-47 194.1 287 39.4
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.9e-47 193.4 286 37.8
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 6.4e-47 192.2 269 40.9
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 8.3e-47 191.8 286 39.9
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.4e-46 191.0 287 38.3
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.4e-46 191.0 278 41.4
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.9e-46 190.7 289 38.1
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 4.1e-46 189.5 288 38.9
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 5.4e-46 189.1 278 39.9
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 5.4e-46 189.1 278 39.9
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 1.2e-45 188.0 278 39.9
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.2e-45 188.0 273 41.0
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 2.1e-45 187.2 287 38.3
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.1e-45 187.2 291 39.5
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 2.1e-45 187.2 282 40.1
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 3.5e-45 186.4 287 39.7
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 6.0e-45 185.7 273 40.7
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 7.8e-45 185.3 272 39.3
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 1.3e-44 184.5 350 34.0
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 1.7e-44 184.1 290 39.7
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 2.3e-44 183.7 354 33.9
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 5.1e-44 182.6 278 39.6
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 6.6e-44 182.2 282 40.4
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 8.6e-44 181.8 263 39.9
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 1.9e-43 180.6 289 38.4
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 1.9e-43 180.6 282 39.7
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.3e-43 179.5 159 56.6
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 5.6e-43 179.1 278 39.9
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 9.6e-43 178.3 278 40.3
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 9.6e-43 178.3 263 39.9
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 9.6e-43 178.3 294 38.8
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.8e-42 176.8 278 36.3
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 4.7e-42 176.0 278 39.9
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 4.7e-42 176.0 278 39.6
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 4.7e-42 176.0 218 45.0
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 4.7e-42 176.0 286 36.0
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 4.7e-42 176.0 275 40.0
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 6.2e-42 175.6 278 39.2
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.4e-41 174.5 278 38.8
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.4e-41 173.7 280 40.0
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 3.1e-41 173.3 278 39.2
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 3.1e-41 173.3 291 36.8
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 5.2e-41 172.6 278 39.2
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 5.2e-41 172.6 293 34.5
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 6.8e-41 172.2 276 37.3
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.2e-40 171.4 268 37.7
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.0e-40 170.6 215 47.9
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.0e-40 170.6 240 45.0
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.0e-40 170.6 342 31.3
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 2.6e-40 170.2 284 37.0
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.3e-39 167.9 235 41.3
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.4e-38 164.5 265 37.7
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 5.4e-38 162.5 260 37.3
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 7.1e-38 162.2 260 36.9
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 9.3e-38 161.8 143 56.6
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 3.5e-37 159.8 156 51.9
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 4.6e-37 159.5 272 37.5
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 2.3e-36 157.1 272 36.8
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 9.6e-35 151.8 165 49.1
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 2.8e-34 150.2 154 50.6
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.4e-33 147.9 290 34.8
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.3e-31 141.4 171 43.3
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 2.9e-31 140.2 304 32.6
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 6.4e-31 139.0 234 35.9
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.6e-28 129.0 221 34.4
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 9.6e-27 125.2 118 50.0
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.1e-25 120.2 199 36.7
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 2.1e-21 107.5 57 86.0
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.3e-20 104.0 260 33.1
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 2.9e-15 87.0 86 51.2
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 4.9e-15 86.3 210 31.9
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.6e-13 81.3 244 26.6
arahy.Tifrunner.gnm1.ann1.7G7S7J Arachis hypogaea HOM05D001900 ORTHO05D003003 2.7e-13 80.5 59 66.1
arahy.Tifrunner.gnm1.ann1.B67DTF Arachis hypogaea HOM05D000323 ORTHO05D038895 2.3e-12 77.4 37 91.9
arahy.Tifrunner.gnm1.ann1.TX33M9 Arachis hypogaea HOM05D003396 ORTHO05D003646 3.0e-12 77.0 36 94.4
arahy.Tifrunner.gnm1.ann1.RIY87W Arachis hypogaea HOM05D002403 ORTHO05D038895 5.1e-12 76.3 36 94.4
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 6.7e-12 75.9 174 29.9
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 7.4e-11 72.4 240 29.2
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.8e-09 67.8 141 31.9
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 2.6e-08 63.9 50 64.0
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 1.0e-07 62.0 50 66.0


User provided reference genes

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