Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 8.4e-185 650.2 325 100.0
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 9.3e-184 646.7 325 99.4
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.3e-172 609.8 310 97.7
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 8.2e-156 553.9 322 82.6
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.5e-154 549.7 322 82.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.2e-153 545.8 322 79.2
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 7.2e-152 540.8 323 79.3
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.3e-150 536.6 322 80.1
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 3.3e-149 531.9 322 77.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 4.3e-149 531.6 322 78.6
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.6e-148 529.6 321 79.8
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.6e-148 529.6 318 79.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.6e-143 513.1 325 77.2
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 8.8e-142 507.3 290 90.0
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 6.9e-139 497.7 321 74.1
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 7.7e-138 494.2 323 72.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.5e-137 490.7 321 73.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.4e-136 490.0 324 71.6
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.5e-136 489.2 321 73.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 3.2e-136 488.8 322 72.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 5.5e-136 488.0 325 71.7
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 7.2e-136 487.6 321 72.9
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.6e-135 486.5 324 74.1
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.1e-135 486.1 322 73.0
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 4.7e-135 485.0 324 71.9
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 4.7e-135 485.0 322 71.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 6.1e-135 484.6 321 72.3
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 1.4e-134 483.4 324 71.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.7e-134 481.1 324 70.7
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 6.7e-134 481.1 324 73.5
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 8.8e-134 480.7 322 73.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 5.7e-133 478.0 324 70.1
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.7e-133 478.0 322 71.4
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 2.2e-132 476.1 332 69.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.2e-132 476.1 322 71.1
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 3.7e-132 475.3 321 69.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 6.3e-132 474.6 324 71.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 6.3e-132 474.6 326 70.9
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.1e-131 473.8 322 71.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.8e-131 473.0 325 69.2
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.8e-131 473.0 325 69.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 5.3e-131 471.5 320 70.3
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.0e-131 471.1 325 68.9
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 9.1e-131 470.7 322 70.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.2e-130 470.3 323 68.7
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.0e-130 469.5 324 68.5
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.5e-130 468.4 323 70.9
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 7.7e-130 467.6 322 69.6
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 3.8e-129 465.3 322 69.6
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 3.8e-129 465.3 319 70.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 6.5e-129 464.5 325 68.3
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 1.5e-128 463.4 318 70.4
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.9e-128 463.0 326 70.2
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.5e-128 462.6 322 69.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.2e-127 460.3 323 68.7
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.6e-127 459.9 317 68.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.1e-127 459.5 326 69.3
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 6.1e-127 458.0 321 68.5
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 8.0e-127 457.6 288 80.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 8.0e-127 457.6 318 70.4
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.0e-126 457.2 322 68.9
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-126 457.2 326 69.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.8e-126 456.4 324 68.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.8e-126 456.4 323 69.0
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.0e-126 455.7 321 70.1
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.0e-126 455.3 323 69.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.1e-125 453.8 326 67.5
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.1e-125 453.8 326 67.8
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.6e-125 452.6 320 70.0
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.4e-125 451.8 321 69.5
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 5.7e-125 451.4 324 66.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.8e-124 449.1 327 67.9
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.8e-124 448.4 321 66.7
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 5.3e-123 444.9 322 68.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.2e-122 443.7 369 61.5
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.6e-122 443.4 323 68.7
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.6e-122 443.4 328 67.7
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 1.0e-121 440.7 323 67.5
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.9e-121 439.1 319 66.8
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 8.5e-121 437.6 326 66.6
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.2e-120 435.6 323 66.6
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 9.4e-120 434.1 325 65.5
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.5e-117 426.8 325 63.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.5e-117 426.8 321 65.1
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 4.4e-117 425.2 322 64.6
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 3.7e-116 422.2 323 62.8
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 3.7e-116 422.2 320 66.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.8e-116 421.8 323 63.2
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 8.3e-116 421.0 325 63.1
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.1e-115 420.6 325 62.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.1e-115 420.6 325 62.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.4e-115 420.2 325 61.8
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.8e-115 419.9 325 61.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.4e-115 419.5 305 65.9
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 9.1e-115 417.5 325 62.2
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 1.2e-114 417.2 325 61.8
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.5e-114 415.6 318 65.4
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.5e-114 415.2 323 63.2
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.9e-113 412.5 324 61.4
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.1e-112 410.6 277 72.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.9e-112 409.8 324 61.4
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.2e-112 409.1 303 63.7
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 5.5e-112 408.3 324 61.1
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 9.4e-112 407.5 264 74.6
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 8.0e-111 404.4 325 60.9
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.4e-110 403.7 323 62.2
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.5e-109 400.2 327 61.5
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.3e-108 397.1 376 57.2
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 8.3e-108 394.4 415 53.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.5e-104 382.9 294 65.0
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-103 380.6 321 60.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.6e-103 380.2 322 60.2
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.1e-103 379.8 286 64.3
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 4.7e-103 378.6 324 58.3
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 3.0e-102 375.9 324 58.0
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.4e-101 372.5 322 59.0
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 2.0e-98 363.2 221 77.4
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 5.9e-98 361.7 541 40.3
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.0e-97 360.9 253 70.0
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 8.3e-92 341.3 272 63.2
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.1e-88 330.9 322 53.4
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 6.2e-87 325.1 683 33.5
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.2e-85 320.9 305 52.8
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 3.5e-82 309.3 256 61.7
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.6e-81 305.1 310 49.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 3.3e-80 302.8 310 48.4
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 3.1e-78 296.2 230 62.2
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 2.4e-75 286.6 308 47.4
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.1e-74 283.5 202 68.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 2.1e-71 273.5 178 75.8
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.1e-70 271.2 221 61.5
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.9e-51 207.2 306 37.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.9e-43 180.6 187 46.0
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 8.5e-36 155.2 96 79.2
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.5e-32 144.4 96 70.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.7e-28 131.0 96 66.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 2.2e-28 130.6 93 63.4
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-28 130.2 93 63.4
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.2e-26 124.8 74 73.0
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 1.6e-26 124.4 121 57.0
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.4e-25 121.3 86 66.3
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.2e-23 114.0 332 26.5
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.6e-21 107.1 88 62.5
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 6.1e-18 95.9 80 57.5
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.8e-15 87.0 99 53.5
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 3.0e-09 67.0 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 3.0e-09 67.0 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 4.0e-09 66.6 54 66.7
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.0e-09 66.6 43 76.7
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 4.0e-09 66.6 56 55.4
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 6.3e-07 59.3 71 45.1
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 4.1e-06 56.6 69 42.0


User provided reference genes

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