Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.4e-190 668.7 340 100.0
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 9.5e-139 497.3 253 96.8
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 1.9e-107 393.3 253 78.7
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 4.0e-105 385.6 253 77.1
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 3.4e-104 382.5 253 75.9
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 5.8e-104 381.7 253 75.9
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 2.9e-103 379.4 253 75.9
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 3.2e-102 375.9 253 74.3
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 5.4e-102 375.2 248 77.0
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.2e-101 374.0 253 74.7
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 3.0e-100 369.4 253 74.7
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 3.9e-100 369.0 249 75.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 1.8e-97 360.1 253 72.7
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 3.0e-92 342.8 227 73.6
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 3.3e-91 339.3 230 73.9
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 2.1e-90 336.7 239 68.2
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.4e-89 333.2 230 72.6
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 2.4e-89 333.2 224 72.3
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 3.1e-89 332.8 230 71.3
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 6.9e-89 331.6 226 71.7
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 1.2e-88 330.9 238 69.3
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 2.6e-88 329.7 223 72.6
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 2.6e-88 329.7 238 68.9
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.9e-87 326.2 226 70.4
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.9e-87 326.2 225 73.8
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 3.8e-87 325.9 212 74.1
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 4.9e-87 325.5 226 71.2
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 6.5e-87 325.1 261 65.1
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 6.5e-87 325.1 226 71.2
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 1.1e-86 324.3 232 70.3
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 5.5e-86 322.0 232 69.4
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 9.3e-86 321.2 244 65.6
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 9.3e-86 321.2 224 68.3
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.7e-85 319.7 244 64.8
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.5e-85 319.3 233 69.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 3.5e-85 319.3 227 69.2
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 2.3e-84 316.6 229 65.9
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 2.3e-84 316.6 217 71.9
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 3.0e-84 316.2 221 69.2
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 5.1e-84 315.5 232 68.1
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 6.7e-84 315.1 223 69.5
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 6.7e-84 315.1 239 66.5
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 6.7e-84 315.1 239 66.5
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 1.5e-83 313.9 223 69.1
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.5e-83 313.2 257 62.3
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 4.3e-83 312.4 223 69.5
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 5.7e-83 312.0 231 68.0
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.4e-83 311.6 231 68.4
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 9.6e-83 311.2 219 70.8
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 2.8e-82 309.7 235 65.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.8e-82 309.7 231 67.1
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.8e-82 308.9 231 67.1
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 8.2e-82 308.1 241 63.1
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 8.2e-82 308.1 259 61.8
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 4.1e-81 305.8 216 69.4
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 4.1e-81 305.8 217 69.6
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 5.3e-81 305.4 244 64.3
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 6.9e-81 305.1 225 69.3
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 6.9e-81 305.1 256 60.2
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 9.0e-81 304.7 218 68.8
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 9.0e-81 304.7 236 65.7
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 4.5e-80 302.4 230 63.5
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 7.6e-80 301.6 223 65.9
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 7.6e-80 301.6 245 64.1
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 1.3e-79 300.8 219 67.6
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 1.4e-78 297.4 225 65.3
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.9e-78 297.0 244 59.8
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.7e-77 293.1 223 64.6
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 3.5e-77 292.7 223 65.5
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.3e-76 290.8 252 59.9
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.8e-76 290.4 223 64.6
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 2.3e-76 290.0 228 64.5
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 8.7e-76 288.1 253 60.5
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 1.1e-75 287.7 222 64.9
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 3.3e-75 286.2 224 63.4
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 4.3e-75 285.8 223 63.2
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 9.7e-75 284.6 223 62.8
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.8e-74 283.1 221 63.8
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.8e-74 283.1 233 59.7
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 2.8e-74 283.1 227 64.3
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 6.3e-74 282.0 229 62.9
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.1e-73 281.2 231 58.4
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.8e-73 280.4 226 62.8
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 3.1e-73 279.6 223 63.2
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 2.0e-72 276.9 217 63.1
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.2e-71 273.5 246 56.9
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 8.5e-71 271.6 251 57.4
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 5.5e-70 268.9 222 61.3
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 7.2e-70 268.5 222 61.3
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 1.2e-69 267.7 251 55.8
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.6e-69 266.2 226 60.2
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.0e-68 264.6 243 58.0
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 1.2e-61 241.1 226 56.6
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.6e-61 240.7 235 51.5
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 5.1e-60 235.7 230 50.4
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.1e-57 226.5 183 63.9
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 7.0e-57 225.3 129 76.0
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.9e-55 219.9 129 76.7
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.1e-53 213.8 124 76.6
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.0e-52 211.5 124 75.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 8.8e-52 208.4 114 86.0
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 3.3e-51 206.5 185 57.8
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.5e-51 205.3 152 67.8
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.2e-50 203.8 151 67.5
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 2.4e-49 200.3 182 57.7
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 3.6e-45 186.4 182 56.0
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 6.1e-45 185.7 147 63.9
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 2.0e-43 180.6 158 62.7
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 4.4e-43 179.5 253 39.1
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.0e-39 168.3 170 51.8
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 2.9e-39 166.8 104 71.2
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 1.6e-37 161.0 137 57.7
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 1.8e-33 147.5 140 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.4e-33 147.1 150 46.7
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 3.8e-31 139.8 117 59.8
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.0e-28 130.2 133 54.1
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.2e-28 129.4 76 77.6
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.7e-27 125.9 76 73.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.5e-27 125.6 75 77.3
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 9.8e-27 125.2 66 86.4
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-26 124.4 76 76.3
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-26 123.6 76 75.0
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-26 123.6 76 75.0
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-26 122.9 75 76.0
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-26 122.9 75 76.0
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 2.4e-25 120.6 73 71.2
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-24 118.2 64 82.8
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 3.0e-23 113.6 140 47.1
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.8e-21 107.1 61 78.7
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 3.6e-21 106.7 174 40.2
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 8.9e-20 102.1 113 55.8
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.5e-19 101.3 109 51.4
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.4e-17 94.7 58 75.9
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 3.2e-17 93.6 135 43.0
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 4.6e-16 89.7 78 56.4
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.6e-16 89.7 76 57.9
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 7.8e-16 89.0 54 74.1
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 8.6e-15 85.5 95 51.6
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.5e-14 84.7 46 76.1
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.3e-14 83.2 51 70.6
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-13 79.7 167 29.9
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 4.7e-13 79.7 183 30.1
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 6.2e-13 79.3 178 30.3
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 6.8e-12 75.9 179 28.5
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.0e-11 74.3 165 26.7
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.3e-10 71.6 86 43.0
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 1.7e-10 71.2 62 62.9
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.9e-10 70.5 176 31.2
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.1e-09 68.6 206 24.8
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 3.2e-09 67.0 185 27.0
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 5.1e-07 59.7 130 29.2
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 1.1e-06 58.5 35 74.3


User provided reference genes

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