Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3RQF03 Arachis hypogaea HOM05D002412 ORTHO05D002516 1.7e-65 253.1 186 100.0
arahy.Tifrunner.gnm1.ann1.QB6IYV Arachis hypogaea HOM05D002412 ORTHO05D002516 4.2e-64 248.4 187 92.0
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 6.5e-33 144.8 189 53.4
Lalb_Chr22g0355701 Lupinus albus HOM05D002412 ORTHO05D002516 3.6e-31 139.0 192 65.6
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 4.7e-31 138.7 194 51.0
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 4.7e-31 138.7 191 50.3
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 8.0e-31 137.9 192 50.5
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 8.8e-30 134.4 191 52.9
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 2.0e-29 133.3 187 51.9
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 4.5e-26 122.1 189 46.0
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 3.6e-23 112.5 165 48.5
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 6.1e-23 111.7 187 43.9
TPR.G13172 Trifolium pratense HOM05D002412 ORTHO05D002516 6.1e-23 111.7 164 47.6
Glyma.06G047300 Glycine max HOM05D002412 ORTHO05D002516 8.0e-23 111.3 196 49.5
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 1.7e-20 103.6 170 44.1
Phvul.009G072700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 4.9e-20 102.1 194 47.4
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 6.3e-20 101.7 202 41.6
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.1e-15 86.7 188 38.3
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 5.2e-14 82.0 189 41.8
Lj1g0008942 Lotus japonicus HOM05D002412 ORTHO05D002516 1.5e-13 80.5 158 43.0
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.4e-13 79.3 187 37.4
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.7e-12 77.0 189 46.6
Medtr3g103260 Medicago truncatula HOM05D002412 ORTHO05D002516 1.7e-12 77.0 75 60.0
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.9e-12 76.3 188 39.4
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.9e-12 75.5 186 37.1
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.9e-12 75.5 186 37.1
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 8.3e-12 74.7 187 34.2
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.1e-11 74.3 66 65.2
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 1.4e-11 73.9 189 37.0
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 4.1e-11 72.4 195 34.9
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 1.2e-10 70.9 180 31.7
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 2.7e-10 69.7 185 34.6
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 6.0e-10 68.6 200 35.0
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.8e-10 68.2 183 37.7
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 3.0e-09 66.2 173 33.5
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 3.9e-09 65.9 186 32.3
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 3.9e-09 65.9 66 62.1
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 3.9e-09 65.9 173 33.5
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 5.0e-09 65.5 69 58.0
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 6.6e-09 65.1 187 34.2
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 8.6e-09 64.7 168 38.1
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 8.6e-09 64.7 66 60.6
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 8.6e-09 64.7 192 38.0
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.6e-09 64.7 181 39.2
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 1.1e-08 64.3 170 33.5
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 1.5e-08 63.9 136 37.5
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.9e-08 63.5 175 30.3
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.9e-08 63.5 193 33.7
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 1.9e-08 63.5 168 34.5
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 2.5e-08 63.2 162 34.0
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.5e-08 63.2 179 38.5
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.5e-08 63.2 151 33.1
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 4.3e-08 62.4 134 41.8
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 4.3e-08 62.4 178 32.6
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 4.3e-08 62.4 189 32.3
VMungo0795G0001 Vigna mungo HOM05D002412 ORTHO05D002516 4.3e-08 62.4 52 73.1
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 5.6e-08 62.0 166 31.9
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 9.5e-08 61.2 156 32.1
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 1.2e-07 60.8 70 60.0
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.2e-07 60.8 187 32.6
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.2e-07 60.8 191 34.0
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 1.6e-07 60.5 170 32.4
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 2.1e-07 60.1 176 30.1
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.8e-07 59.7 190 33.2
AT4G33800 Arabidopsis thaliana HOM05D002412 ORTHO05D002516 3.6e-07 59.3 168 32.7
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 3.6e-07 59.3 171 30.4
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.7e-07 58.9 190 33.2
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 6.2e-07 58.5 180 29.4
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 6.2e-07 58.5 67 55.2
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 8.0e-07 58.2 184 31.0
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 8.0e-07 58.2 179 30.7
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 1.4e-06 57.4 173 34.1
RcHm_v2.0_Chr6g0309821 Rosa chinensis HOM05D002412 ORTHO05D002516 1.4e-06 57.4 66 56.1
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 1.8e-06 57.0 71 47.9
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 1.8e-06 57.0 179 30.7
Gohir.A06G024600 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.8e-06 57.0 183 34.4
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 2.3e-06 56.6 185 29.7
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 2.3e-06 56.6 161 32.3
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 3.1e-06 56.2 185 33.5
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 4.0e-06 55.8 66 51.5
Gohir.D06G021700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.0e-06 55.8 183 34.4
Gorai.010G026300 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.0e-06 55.8 183 33.9
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 4.0e-06 55.8 166 29.5
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 4.0e-06 55.8 178 30.3
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 5.2e-06 55.5 66 48.5
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 5.2e-06 55.5 184 29.3
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 5.2e-06 55.5 149 31.5
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 6.8e-06 55.1 72 47.2
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 6.8e-06 55.1 72 47.2
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 6.8e-06 55.1 177 31.1
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 8.9e-06 54.7 189 32.3


User provided reference genes

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