Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 8.7e-55 216.9 120 100.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.6e-53 212.6 120 90.8
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 3.7e-53 211.5 123 97.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.0e-39 166.8 122 72.1
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 8.8e-39 163.7 117 71.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 3.3e-38 161.8 122 69.7
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 5.7e-38 161.0 86 88.4
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.7e-37 159.5 86 87.2
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.7e-37 159.5 86 87.2
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.7e-37 159.5 86 87.2
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.7e-37 159.5 86 89.5
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.2e-37 159.1 86 89.5
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.2e-37 159.1 116 70.7
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.8e-37 158.7 117 69.2
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.3e-37 157.5 118 70.3
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 8.2e-37 157.1 86 86.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.1e-36 156.8 120 70.0
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.1e-36 156.8 116 70.7
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.4e-36 156.4 85 87.1
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.4e-36 156.4 85 85.9
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.8e-36 156.0 86 87.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.8e-36 156.0 85 84.7
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.8e-36 156.0 85 84.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.4e-36 155.6 116 68.1
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.4e-36 155.6 122 68.9
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.3e-36 154.5 86 83.7
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 7.0e-36 154.1 120 67.5
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 7.0e-36 154.1 86 86.0
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.1e-36 153.7 117 69.2
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 9.1e-36 153.7 117 67.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 9.1e-36 153.7 86 84.9
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.2e-35 153.3 116 66.4
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.5e-35 152.9 86 86.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.0e-35 152.5 85 84.7
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 2.6e-35 152.1 85 85.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.6e-35 152.1 85 85.9
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.6e-35 152.1 85 85.9
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.5e-35 151.8 120 66.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 3.5e-35 151.8 85 84.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.5e-35 151.4 84 84.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 4.5e-35 151.4 85 84.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.5e-35 151.4 85 84.7
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 4.5e-35 151.4 117 67.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.9e-35 151.0 85 84.7
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.7e-35 150.6 118 68.6
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.0e-34 150.2 86 81.4
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.0e-34 150.2 86 82.6
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.0e-34 150.2 117 66.7
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.3e-34 149.8 118 66.9
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.3e-34 149.8 122 67.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.7e-34 149.4 85 83.5
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.7e-34 149.4 118 67.8
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.9e-34 148.7 120 68.3
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.9e-34 148.7 86 83.7
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.9e-34 148.7 87 83.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.8e-34 148.3 84 83.3
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.0e-34 147.9 85 82.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 8.5e-34 147.1 85 80.0
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 8.5e-34 147.1 88 83.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 8.5e-34 147.1 86 81.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.4e-33 146.4 84 81.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.4e-33 146.4 117 65.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.9e-33 146.0 86 81.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.9e-33 146.0 115 65.2
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.5e-33 145.6 84 79.8
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-33 145.6 117 65.0
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 3.2e-33 145.2 86 79.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 3.2e-33 145.2 86 81.4
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.2e-33 144.8 86 79.1
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.2e-33 144.8 117 65.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.2e-33 144.8 86 79.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.2e-33 144.1 120 64.2
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 7.2e-33 144.1 85 80.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 7.2e-33 144.1 84 78.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.2e-32 143.3 86 81.4
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.2e-32 143.3 84 77.4
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-32 143.3 117 64.1
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.6e-32 142.9 119 63.0
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 2.1e-32 142.5 122 59.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.1e-32 142.5 117 64.1
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.1e-32 142.5 118 63.6
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.7e-32 142.1 86 80.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.7e-32 142.1 120 60.0
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.7e-32 142.1 120 60.0
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.6e-32 141.7 120 60.0
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 4.7e-32 141.4 86 77.9
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 4.7e-32 141.4 86 77.9
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 4.7e-32 141.4 86 77.9
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 4.7e-32 141.4 116 65.5
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 6.1e-32 141.0 120 60.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 6.1e-32 141.0 120 60.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 6.1e-32 141.0 86 77.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 6.1e-32 141.0 121 61.2
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 8.0e-32 140.6 76 86.8
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 8.0e-32 140.6 85 77.6
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.0e-31 140.2 87 78.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.4e-31 139.8 120 61.7
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.4e-31 139.8 86 76.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.8e-31 139.4 86 77.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.3e-31 139.0 86 77.9
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 3.9e-31 138.3 86 76.7
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.9e-31 138.3 86 74.4
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.9e-31 138.3 86 73.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 5.2e-31 137.9 123 57.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 8.8e-31 137.1 113 64.6
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.1e-30 136.7 84 79.8
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-30 136.3 87 77.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 3.3e-30 135.2 86 72.1
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.3e-30 135.2 86 75.6
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 5.7e-30 134.4 87 75.9
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.7e-29 132.9 83 74.7
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.8e-29 132.1 111 64.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.7e-29 131.7 86 72.1
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 4.8e-29 131.3 84 75.0
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 8.2e-29 130.6 85 71.8
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.1e-28 130.2 81 77.8
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.4e-28 129.8 131 53.4
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.8e-28 129.4 159 50.3
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.4e-28 129.0 86 69.8
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.6e-27 126.3 90 70.0
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-27 125.9 82 68.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-27 125.9 82 68.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.0e-26 123.6 72 80.6
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.2e-26 122.5 89 69.7
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.8e-26 121.7 82 67.1
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 5.0e-26 121.3 88 69.3
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 3.6e-24 115.2 81 67.9
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 3.6e-24 115.2 79 69.6
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.7e-24 114.8 77 70.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 5.2e-23 111.3 65 83.1
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.3e-21 106.7 183 38.3
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.7e-21 106.3 77 66.2
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 2.2e-21 105.9 78 71.8
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.7e-21 105.1 116 52.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-21 104.8 107 57.0
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 4.8e-21 104.8 91 61.5
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.1e-20 101.7 94 59.6
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 7.0e-20 100.9 90 60.0
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.6e-19 99.8 65 72.3
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.5e-19 98.2 64 73.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 4.5e-19 98.2 60 80.0
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.7e-18 96.3 60 76.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-16 89.7 74 60.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-16 89.4 77 57.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-16 89.4 77 57.1
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 2.7e-16 89.0 65 61.5
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.7e-16 88.2 61 73.8
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.3e-15 85.9 79 50.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 4.0e-15 85.1 50 82.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 4.0e-15 85.1 69 55.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.0e-15 85.1 51 78.4
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 8.8e-15 84.0 63 63.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 9.8e-14 80.5 66 60.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.1e-12 77.0 55 67.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 7.7e-11 70.9 68 47.1
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.7e-10 69.7 46 73.9
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.9e-09 66.2 78 48.7
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.3e-09 65.5 50 70.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.6e-08 62.0 41 65.9
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 6.1e-08 61.2 72 45.8
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 4.0e-07 58.5 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 4.0e-07 58.5 65 44.6


User provided reference genes

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