Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 4.6e-110 401.4 223 100.0
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 2.3e-56 223.0 127 93.7
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 6.6e-56 221.5 127 92.1
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 3.0e-32 142.9 134 59.7
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 4.3e-31 139.0 140 55.7
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 3.1e-29 132.9 134 55.2
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 9.0e-29 131.3 138 55.1
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 1.2e-28 131.0 133 53.4
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 3.4e-28 129.4 137 55.5
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 1.7e-27 127.1 119 58.8
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 1.6e-25 120.6 120 56.7
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 2.1e-22 110.2 115 54.8
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 5.3e-21 105.5 111 53.2
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 1.2e-20 104.4 112 51.8
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 4.5e-20 102.4 112 51.8
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 7.6e-20 101.7 118 50.8
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 9.9e-20 101.3 112 50.9
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.7e-19 100.5 112 50.9
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.2e-19 100.1 110 50.0
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 2.9e-19 99.8 112 51.8
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.9e-19 99.8 111 49.5
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 3.8e-19 99.4 112 50.0
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.8e-19 99.4 111 49.5
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 4.9e-19 99.0 110 50.9
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 3.2e-18 96.3 112 47.3
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 1.2e-17 94.4 106 48.1
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 4.6e-17 92.4 125 50.4
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 4.6e-17 92.4 100 53.0
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.0e-16 91.3 121 47.9
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.8e-16 90.5 103 52.4
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 2.3e-16 90.1 103 46.6
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 3.0e-16 89.7 104 51.0
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 3.0e-16 89.7 116 48.3
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 3.9e-16 89.4 126 46.0
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 5.1e-16 89.0 87 50.6
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 8.7e-16 88.2 102 48.0
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 8.7e-16 88.2 121 46.3
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 1.5e-15 87.4 106 44.3
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 4.3e-15 85.9 124 44.4
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 5.6e-15 85.5 106 49.1
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 7.4e-15 85.1 129 41.1
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 7.4e-15 85.1 110 50.0
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 1.3e-14 84.3 102 49.0
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 1.3e-14 84.3 115 45.2
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.6e-14 84.0 124 42.7
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 1.6e-14 84.0 103 47.6
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.6e-14 84.0 126 45.2
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 1.6e-14 84.0 106 48.1
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 1.6e-14 84.0 83 56.6
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 2.1e-14 83.6 102 47.1
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 3.7e-14 82.8 125 41.6
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 3.7e-14 82.8 124 41.1
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 4.8e-14 82.4 102 46.1
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 6.2e-14 82.0 100 46.0
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 6.2e-14 82.0 90 45.6
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.8e-13 80.5 99 46.5
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.8e-13 80.5 104 44.2
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 3.1e-13 79.7 121 39.7
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 3.1e-13 79.7 98 45.9
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 4.0e-13 79.3 98 45.9
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.0e-13 79.3 142 37.3
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 5.3e-13 79.0 96 49.0
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 6.9e-13 78.6 122 41.8
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 6.9e-13 78.6 103 46.6
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.2e-12 77.8 84 48.8
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.5e-12 77.4 100 45.0
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 3.4e-12 76.3 123 41.5
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.0e-11 74.7 96 47.9
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 1.7e-11 73.9 96 47.9
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.7e-11 73.9 96 47.9
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 2.2e-11 73.6 99 43.4
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.2e-11 73.6 78 52.6
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 2.9e-11 73.2 124 38.7
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 4.9e-11 72.4 79 51.9
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 8.4e-11 71.6 96 46.9
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.4e-10 70.9 99 44.4
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.5e-10 70.1 81 48.1
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 2.5e-10 70.1 101 40.6
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 3.2e-10 69.7 100 43.0
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 5.5e-10 68.9 70 54.3
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 7.1e-10 68.6 97 45.4
Ca_31281_v3 Cicer arietinum L. HOM05D007217 ORTHO05D009092 1.6e-09 67.4 60 56.7
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 1.6e-09 67.4 87 47.1
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.3e-08 64.3 106 36.8
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.8e-08 63.9 106 37.7
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.8e-08 63.9 89 46.1
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 1.8e-08 63.9 110 36.4
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 2.3e-08 63.5 64 53.1
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 3.9e-08 62.8 76 42.1
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 5.1e-08 62.4 94 41.5
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 6.7e-08 62.0 69 44.9
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 8.7e-08 61.6 89 40.4
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 2.5e-07 60.1 95 41.1
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.5e-07 60.1 88 39.8
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.5e-07 60.1 88 39.8
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 9.6e-07 58.2 82 41.5
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 9.6e-07 58.2 131 35.1
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.3e-06 57.8 114 35.1
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.6e-06 57.4 97 40.2
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 2.1e-06 57.0 49 59.2
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 4.8e-06 55.8 126 35.7
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 6.3e-06 55.5 62 46.8


User provided reference genes

Program Settings