Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.0e-256 888.6 461 100.0
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.6e-248 861.7 461 97.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 6.0e-144 515.0 480 60.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 3.3e-142 509.2 479 59.9
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 9.5e-142 507.7 480 59.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.9e-138 496.1 479 58.9
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 1.9e-134 483.4 484 58.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.6e-133 480.3 484 58.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.6e-133 480.3 485 58.4
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.8e-133 479.6 481 58.2
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 9.9e-123 444.5 486 54.9
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 4.9e-122 442.2 484 53.9
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.1e-121 441.0 482 53.1
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.1e-120 436.8 481 53.2
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.0e-119 434.5 481 54.5
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.3e-119 434.1 486 53.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.7e-119 433.7 476 53.6
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.5e-118 429.9 486 52.5
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-116 424.5 476 52.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.4e-116 423.3 473 52.9
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.1e-116 422.9 480 51.7
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.0e-115 420.2 479 52.0
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.4e-115 419.5 479 52.0
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 9.9e-115 417.9 479 51.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 6.4e-114 415.2 481 52.2
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.1e-113 411.8 481 50.7
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.6e-112 410.6 481 52.2
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.5e-112 409.5 484 51.4
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.5e-112 409.5 484 51.4
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 7.9e-112 408.3 477 50.7
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.8e-111 407.1 484 51.4
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 3.0e-111 406.4 481 50.1
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 6.7e-111 405.2 479 50.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-110 403.7 472 50.6
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 5.6e-110 402.1 485 50.5
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 9.6e-110 401.4 482 50.4
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.3e-109 401.0 468 50.6
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-109 400.6 493 49.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.8e-109 399.8 482 49.8
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 8.1e-109 398.3 483 49.7
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 8.1e-109 398.3 492 48.8
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-108 397.5 493 49.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.1e-108 396.4 480 49.4
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 9.9e-107 391.3 421 50.8
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.3e-106 391.0 483 49.9
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-106 391.0 473 48.8
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.9e-106 389.8 607 42.2
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 7.1e-105 385.2 464 48.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.2e-104 384.4 464 48.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.9e-104 381.7 464 48.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.0e-103 381.3 476 47.9
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.0e-103 381.3 350 59.7
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 3.0e-103 379.8 483 47.8
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.0e-103 379.8 471 48.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.9e-103 379.4 476 47.9
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 9.6e-102 374.8 513 46.2
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 2.8e-101 373.2 466 48.3
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.8e-101 372.5 482 47.3
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 6.2e-101 372.1 479 48.0
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 6.2e-101 372.1 476 48.7
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.8e-100 370.5 476 47.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 9.0e-100 368.2 490 45.7
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.5e-99 367.5 477 46.5
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 4.5e-99 365.9 478 49.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 4.5e-99 365.9 478 47.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-97 360.9 478 46.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.2e-97 359.4 491 47.3
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.6e-96 357.5 508 44.5
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.3e-95 353.6 539 42.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.0e-95 353.2 474 46.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.1e-94 351.3 479 46.6
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 7.4e-94 348.6 503 44.5
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.8e-93 346.7 478 45.4
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.8e-93 346.7 478 45.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 4.8e-93 345.9 480 46.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.8e-92 344.0 483 45.8
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.4e-92 343.6 473 44.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 6.9e-92 342.0 496 45.4
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 9.0e-92 341.7 473 44.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.5e-91 340.9 475 45.1
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 7.6e-91 338.6 473 43.6
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.3e-90 337.8 475 45.3
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.3e-90 337.8 473 44.2
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.8e-90 336.3 479 43.8
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.0e-90 335.9 478 45.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.0e-90 335.9 471 45.9
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.0e-90 335.9 487 45.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.5e-90 335.5 413 47.9
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.5e-90 335.5 446 46.9
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.9e-89 334.0 471 45.6
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 7.2e-89 332.0 458 44.5
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 7.2e-89 332.0 478 45.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 9.3e-89 331.6 406 47.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.1e-88 330.5 469 44.6
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 4.6e-88 329.3 477 45.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.9e-88 328.6 469 45.2
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.3e-87 327.8 469 45.0
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.8e-87 327.4 480 44.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.9e-87 326.2 470 44.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.1e-87 325.9 470 45.1
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 8.7e-87 325.1 471 44.6
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.1e-86 324.7 536 41.8
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.5e-86 323.6 472 44.3
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.7e-86 322.4 487 43.5
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.8e-85 320.1 481 43.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 8.2e-85 318.5 450 44.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-84 318.2 488 42.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.4e-84 317.8 387 52.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 9.1e-84 315.1 479 43.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.2e-83 314.7 422 44.5
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 7.7e-83 312.0 473 43.6
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.2e-81 306.6 433 42.7
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-80 303.9 432 41.9
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 3.6e-80 303.1 304 53.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.1e-80 302.4 439 43.3
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.9e-80 302.0 468 40.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.0e-79 300.1 279 57.7
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 5.1e-79 299.3 472 42.6
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.4e-78 296.2 428 43.7
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-77 294.3 482 41.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.2e-77 293.9 387 45.5
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.2e-75 288.1 472 41.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-75 288.1 380 44.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.9e-75 285.8 483 40.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.0e-74 285.0 469 42.0
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.0e-74 285.0 375 45.9
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.1e-73 281.6 433 39.7
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.4e-71 274.6 393 42.5
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.4e-70 268.9 421 40.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.7e-69 266.5 294 49.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 7.0e-68 262.3 377 45.4
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 1.7e-66 257.7 483 37.5
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.9e-66 256.9 375 44.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.8e-66 256.5 237 55.3
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 8.5e-66 255.4 328 45.1
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-65 255.0 212 59.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-65 254.6 453 39.1
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.6e-64 251.1 368 41.8
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.0e-63 246.5 364 40.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 7.5e-62 242.3 357 42.0
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.8e-60 237.7 315 45.1
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.5e-59 233.0 326 42.0
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.7e-59 232.3 280 46.8
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.0e-55 221.9 143 74.1
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.8e-55 219.2 333 41.1
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.6e-54 217.2 385 40.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.7e-53 213.4 462 34.8
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.3e-53 212.6 299 41.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 7.0e-52 209.1 303 41.6
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 5.0e-50 203.0 206 51.9
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 6.5e-50 202.6 324 38.3
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.9e-49 201.1 460 35.2
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 3.6e-48 196.8 291 43.0
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 8.0e-48 195.7 200 53.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.0e-47 195.3 381 39.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.4e-47 194.9 221 50.7
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.8e-47 194.5 367 36.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.1e-44 183.7 237 45.1
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.2e-43 181.8 206 45.6
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 4.5e-43 179.9 214 46.7
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 6.1e-40 169.5 334 35.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 6.8e-39 166.0 347 35.2
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 9.8e-38 162.2 101 76.2
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.1e-36 158.7 137 58.4
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.2e-35 155.2 322 33.2
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-33 148.3 251 38.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.8e-32 144.1 220 41.8
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.6e-27 126.7 107 57.9
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.0e-26 123.2 78 73.1
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.2e-24 118.6 187 39.6
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.8e-24 117.5 80 68.8
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.2e-24 116.3 195 40.0
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 1.4e-23 115.2 189 38.6
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.1e-19 101.3 86 58.1
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 7.8e-19 99.4 104 50.0
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.1e-15 89.0 63 66.7
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 4.1e-12 77.0 56 66.1
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 7.6e-06 56.2 34 79.4


User provided reference genes

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