Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 2.5e-89 332.0 161 100.0
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 4.0e-55 218.4 151 69.5
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.4e-52 209.9 149 67.1
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 2.4e-52 209.1 154 64.9
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.6e-51 206.5 149 68.5
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.8e-50 203.0 149 66.4
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 3.0e-50 202.2 161 62.7
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 3.9e-50 201.8 155 64.5
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.6e-48 196.4 155 63.9
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.8e-47 193.0 152 60.5
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 9.0e-47 190.7 151 60.3
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 9.9e-46 187.2 151 59.6
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 9.9e-46 187.2 151 59.6
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 9.9e-46 187.2 151 58.9
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-45 186.8 151 58.9
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.9e-44 183.0 151 58.9
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 3.2e-44 182.2 150 58.7
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 5.5e-44 181.4 151 58.9
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.5e-44 181.4 151 57.6
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.1e-43 179.5 152 57.2
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 2.1e-43 179.5 151 57.6
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 6.0e-43 177.9 151 58.9
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 6.0e-43 177.9 151 57.6
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 1.3e-42 176.8 157 56.1
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.3e-42 176.0 151 54.3
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 3.9e-42 175.3 151 58.3
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 6.7e-42 174.5 148 55.4
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 6.7e-42 174.5 148 59.5
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 8.7e-42 174.1 149 54.4
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.1e-41 173.7 149 55.7
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 1.1e-41 173.7 148 56.1
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 1.9e-41 172.9 150 55.3
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 2.5e-41 172.6 149 53.7
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.3e-41 172.2 151 55.0
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.3e-41 172.2 152 54.6
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.3e-41 171.8 150 55.3
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 5.6e-41 171.4 157 52.2
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 5.6e-41 171.4 149 55.0
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.1e-40 169.5 151 54.3
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 4.8e-40 168.3 146 53.4
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 6.2e-40 167.9 148 53.4
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 6.2e-40 167.9 148 53.4
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 1.8e-39 166.4 129 61.2
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 4.0e-39 165.2 148 55.4
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.0e-39 165.2 151 55.6
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 3.4e-38 162.2 149 52.3
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 7.6e-38 161.0 148 52.0
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 2.9e-37 159.1 150 53.3
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 2.9e-37 159.1 150 53.3
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 3.8e-37 158.7 150 53.3
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 4.9e-37 158.3 149 53.7
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 4.9e-37 158.3 151 51.0
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.4e-36 156.8 150 53.3
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.4e-36 156.8 149 48.3
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 2.5e-36 156.0 151 49.0
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 3.2e-36 155.6 149 51.0
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 3.2e-36 155.6 151 49.7
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 2.7e-35 152.5 151 49.7
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 4.6e-35 151.8 151 52.3
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.6e-35 151.8 150 52.0
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.6e-35 151.8 150 52.0
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.0e-34 150.6 149 47.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 1.8e-34 149.8 149 47.7
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 2.3e-34 149.4 151 51.0
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 3.0e-34 149.1 151 48.3
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 3.9e-34 148.7 149 45.6
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 3.9e-34 148.7 149 47.0
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 5.1e-34 148.3 150 48.0
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 6.7e-34 147.9 148 46.6
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 6.7e-34 147.9 134 51.5
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.5e-33 146.7 135 50.4
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.9e-33 146.4 148 45.9
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 3.3e-33 145.6 149 47.7
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 5.7e-33 144.8 149 45.6
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 9.7e-33 144.1 151 49.0
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 2.2e-32 142.9 150 47.3
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.7e-32 142.1 147 46.9
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.7e-32 142.1 147 46.9
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 3.7e-32 142.1 147 44.9
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 3.7e-32 142.1 93 65.6
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 3.7e-32 142.1 151 48.3
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 4.8e-32 141.7 150 48.7
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.8e-32 141.7 155 49.0
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.1e-31 140.6 150 47.3
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 1.8e-31 139.8 147 42.9
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 3.1e-31 139.0 150 47.3
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 4.1e-31 138.7 150 46.7
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 4.1e-31 138.7 150 46.7
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 4.1e-31 138.7 150 46.0
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 4.1e-31 138.7 133 51.1
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 6.9e-31 137.9 149 45.0
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 9.0e-31 137.5 149 45.0
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.2e-30 137.1 150 47.3
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.0e-30 136.3 148 44.6
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 2.6e-30 136.0 151 43.0
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 3.4e-30 135.6 148 45.3
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 5.9e-30 134.8 147 46.3
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 7.6e-30 134.4 149 43.6
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.2e-29 132.9 147 45.6
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 2.2e-29 132.9 141 44.0
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 5.0e-29 131.7 149 43.0
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 8.5e-29 131.0 149 43.6
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 8.5e-29 131.0 149 43.6
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 8.5e-29 131.0 149 47.0
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.1e-28 130.6 147 44.2
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.1e-28 130.6 154 43.5
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.9e-28 129.8 148 43.2
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 3.2e-28 129.0 151 46.4
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 4.2e-28 128.6 157 41.4
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.2e-28 128.6 150 42.7
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 5.5e-28 128.3 152 40.1
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 9.3e-28 127.5 150 42.7
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.2e-27 127.1 150 42.7
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 1.6e-27 126.7 150 42.7
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 6.1e-27 124.8 149 43.0
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 6.1e-27 124.8 150 42.0
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 6.1e-27 124.8 148 45.9
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 6.1e-27 124.8 147 44.2
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 7.9e-27 124.4 149 43.0
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-26 123.6 147 42.2
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-25 120.6 149 42.3
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 4.3e-25 118.6 149 42.3
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 4.3e-25 118.6 148 41.2
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 5.7e-25 118.2 150 43.3
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 7.4e-25 117.9 150 42.0
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 2.8e-24 115.9 145 42.1
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.8e-24 115.9 151 39.7
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 4.8e-24 115.2 150 41.3
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 6.3e-24 114.8 145 42.1
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.2e-24 114.4 123 43.1
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.8e-23 113.2 98 48.0
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.1e-23 112.5 150 43.3
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 3.1e-23 112.5 150 40.7
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 4.1e-23 112.1 149 40.3
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 9.1e-23 110.9 152 40.8
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 2.6e-22 109.4 147 39.5
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 4.5e-22 108.6 149 39.6
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 3.8e-21 105.5 124 41.9
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.1e-20 104.0 164 38.4
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.4e-20 103.6 147 38.1
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.2e-19 100.5 142 33.8
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.1e-19 99.8 150 40.0
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 3.6e-19 99.0 152 38.2
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.8e-18 96.7 151 41.7
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 3.0e-18 95.9 152 34.9
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 6.3e-16 88.2 117 40.2
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 9.1e-15 84.3 111 40.5
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.5e-14 83.6 159 34.6
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 7.7e-14 81.3 94 42.6
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 7.7e-14 81.3 124 41.1
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.0e-13 80.9 155 32.3
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.2e-13 79.7 148 38.5
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 3.8e-13 79.0 95 43.2
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 4.2e-12 75.5 135 28.9
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 5.5e-12 75.1 151 37.1
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.6e-11 73.6 136 30.1
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 1.6e-11 73.6 141 35.5
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.7e-11 72.8 127 36.2
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 6.1e-11 71.6 135 31.1
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.0e-10 69.3 136 30.9
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.3e-08 63.9 113 38.1
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.1e-07 60.8 68 48.5
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.1e-07 60.8 146 30.8
Cre24.g755497 Chlamydomonas reinhardtii HOM05D004153 ORTHO05D004678 5.3e-07 58.5 150 26.0
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 7.0e-07 58.2 117 29.9
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 4.5e-06 55.5 149 29.5


User provided reference genes

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