Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 3.3e-74 281.6 137 100.0
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 3.0e-43 178.7 120 76.7
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 3.0e-43 178.7 120 76.7
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.5e-42 176.4 126 71.4
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 2.0e-42 176.0 126 73.0
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 7.4e-42 174.1 126 70.6
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 7.4e-42 174.1 126 70.6
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 7.4e-42 174.1 126 70.6
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 9.7e-42 173.7 126 70.6
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.3e-41 173.3 126 69.8
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.7e-41 172.9 129 69.0
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 2.2e-41 172.6 129 67.4
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 2.2e-41 172.6 120 71.7
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 2.8e-41 172.2 124 71.0
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 2.8e-41 172.2 126 69.8
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 3.7e-41 171.8 126 67.5
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 4.8e-41 171.4 126 68.3
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.8e-41 171.4 129 69.8
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 6.3e-41 171.0 129 66.7
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 6.3e-41 171.0 129 67.4
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 6.3e-41 171.0 126 68.3
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 6.3e-41 171.0 126 68.3
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 8.2e-41 170.6 129 66.7
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 8.2e-41 170.6 126 69.8
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 8.2e-41 170.6 129 66.7
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 1.1e-40 170.2 126 68.3
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.4e-40 169.9 125 67.2
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 1.4e-40 169.9 129 69.0
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.4e-40 169.9 129 67.4
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.4e-40 169.9 129 66.7
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 1.4e-40 169.9 126 68.3
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.8e-40 169.5 126 66.7
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 1.8e-40 169.5 126 69.0
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.4e-40 169.1 126 67.5
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.4e-40 169.1 126 67.5
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 2.4e-40 169.1 126 69.8
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 2.4e-40 169.1 129 69.0
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 2.4e-40 169.1 126 67.5
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 2.4e-40 169.1 129 65.9
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 3.1e-40 168.7 126 67.5
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 3.1e-40 168.7 126 67.5
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 3.1e-40 168.7 126 69.8
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.1e-40 168.7 126 67.5
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 4.1e-40 168.3 126 68.3
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.3e-40 167.9 129 65.9
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 5.3e-40 167.9 129 65.9
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 5.3e-40 167.9 129 68.2
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 5.3e-40 167.9 129 64.3
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 5.3e-40 167.9 126 67.5
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 6.9e-40 167.5 126 66.7
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 6.9e-40 167.5 126 67.5
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 6.9e-40 167.5 129 65.1
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 6.9e-40 167.5 126 68.3
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 6.9e-40 167.5 126 68.3
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 9.1e-40 167.2 126 65.9
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.2e-39 166.8 123 69.9
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.2e-39 166.8 126 65.9
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 1.2e-39 166.8 116 70.7
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.5e-39 166.4 129 65.1
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-39 166.4 126 65.1
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 1.5e-39 166.4 126 67.5
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.5e-39 166.4 127 66.1
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.5e-39 166.4 126 66.7
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.0e-39 166.0 126 65.9
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 2.0e-39 166.0 129 63.6
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 2.0e-39 166.0 129 63.6
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 2.0e-39 166.0 126 65.9
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.0e-39 166.0 129 65.9
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.6e-39 165.6 124 67.7
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 2.6e-39 165.6 126 66.7
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 2.6e-39 165.6 126 65.9
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.5e-39 164.9 129 65.1
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.5e-39 164.9 126 64.3
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 4.5e-39 164.9 126 66.7
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 4.5e-39 164.9 126 65.1
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 4.5e-39 164.9 121 66.9
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 5.9e-39 164.5 126 65.9
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 5.9e-39 164.5 131 62.6
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 1.0e-38 163.7 126 65.9
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.7e-38 162.9 129 63.6
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.2e-38 162.5 139 61.2
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 2.9e-38 162.2 126 65.1
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 3.8e-38 161.8 129 62.0
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.5e-38 161.0 126 63.5
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 1.1e-37 160.2 168 53.6
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.1e-37 160.2 129 62.8
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.1e-37 160.2 129 61.2
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.1e-37 160.2 133 62.4
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 1.4e-37 159.8 129 62.0
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 1.4e-37 159.8 120 65.8
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 1.9e-37 159.5 170 52.9
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 3.2e-37 158.7 124 62.9
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.2e-37 158.7 124 63.7
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 3.2e-37 158.7 124 63.7
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 3.2e-37 158.7 129 65.1
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 7.2e-37 157.5 129 60.5
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 7.2e-37 157.5 129 61.2
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 9.4e-37 157.1 126 61.9
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 9.4e-37 157.1 126 62.7
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 2.1e-36 156.0 124 62.9
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 4.7e-36 154.8 126 61.1
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 7.9e-36 154.1 126 59.5
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 7.9e-36 154.1 126 59.5
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 7.9e-36 154.1 126 59.5
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 7.9e-36 154.1 126 60.3
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.8e-35 152.9 124 61.3
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 2.3e-35 152.5 126 61.1
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 3.0e-35 152.1 124 60.5
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 5.1e-35 151.4 124 61.3
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 8.8e-35 150.6 120 62.5
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 8.8e-35 150.6 137 54.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.1e-34 150.2 129 58.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 1.1e-34 150.2 126 58.7
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 2.6e-34 149.1 124 59.7
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 4.4e-34 148.3 175 48.0
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 5.7e-34 147.9 126 61.9
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 5.7e-34 147.9 126 58.7
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 7.4e-34 147.5 126 57.9
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 7.4e-34 147.5 137 52.6
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 7.4e-34 147.5 137 52.6
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 1.3e-33 146.7 141 55.3
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.3e-33 146.7 115 63.5
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.7e-33 146.4 138 54.3
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 2.2e-33 146.0 132 56.1
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 2.2e-33 146.0 137 53.3
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.2e-33 146.0 132 56.1
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 2.8e-33 145.6 126 60.3
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 4.8e-33 144.8 126 56.3
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 8.2e-33 144.1 135 54.1
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.1e-32 143.7 150 50.7
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 2.4e-32 142.5 118 58.5
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 2.4e-32 142.5 125 59.2
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.0e-31 139.4 120 60.0
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.2e-30 136.0 135 52.6
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 8.0e-28 127.5 126 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 8.8e-27 124.0 126 50.8
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 5.7e-26 121.3 103 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 9.7e-26 120.6 124 51.6
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 3.7e-25 118.6 126 50.8
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.7e-25 118.6 129 49.6
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 1.0e-22 110.5 128 49.2
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 1.7e-22 109.8 129 46.5
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 5.5e-21 104.8 55 85.5
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 2.7e-20 102.4 109 52.3
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.0e-19 100.5 52 84.6
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 1.3e-17 93.6 50 82.0
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 3.7e-17 92.0 52 75.0
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 1.2e-15 87.0 49 77.6
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.2e-14 82.8 44 86.4
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.9e-14 82.4 44 81.8
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 2.5e-13 79.3 45 75.6
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 2.5e-13 79.3 44 79.5
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 9.4e-13 77.4 44 75.0
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 1.2e-12 77.0 44 79.5
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 9.8e-10 67.4 35 82.9
HanXRQChr06g0179151 Helianthus annuus HOM05D003665 ORTHO05D004387 2.8e-09 65.9 36 80.6
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 1.4e-08 63.5 131 35.1
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.8e-08 63.2 44 63.6
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.2e-07 60.5 63 46.0
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 2.7e-07 59.3 44 59.1
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 2.7e-07 59.3 44 59.1
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 1.3e-06 57.0 43 58.1


User provided reference genes

Program Settings