Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.3e-197 693.0 362 100.0
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 3.2e-193 678.3 362 97.8
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 9.2e-124 447.6 378 67.7
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 7.8e-115 417.9 377 64.5
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 2.3e-106 389.8 375 61.6
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 5.6e-105 385.2 415 56.9
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.3e-97 359.4 359 59.6
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 4.4e-94 349.0 374 56.1
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 9.6e-89 331.3 374 54.0
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.9e-85 318.9 396 50.8
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 7.1e-84 315.1 409 48.2
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.9e-81 307.0 423 47.8
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 4.8e-80 302.4 439 46.7
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.8e-80 302.4 407 47.2
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 1.8e-79 300.4 388 49.5
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.8e-79 300.4 408 48.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 3.1e-79 299.7 415 47.2
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 9.0e-79 298.1 377 51.5
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 9.9e-78 294.7 392 50.0
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 3.8e-77 292.7 392 47.7
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 7.1e-76 288.5 400 48.8
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.3e-74 284.3 420 45.0
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 1.8e-74 283.9 378 49.2
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 4.3e-73 279.3 376 48.1
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 5.6e-73 278.9 375 48.5
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.3e-72 277.7 395 46.1
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 3.7e-72 276.2 418 45.7
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.8e-72 275.8 388 46.9
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.2e-72 275.4 419 46.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 8.2e-72 275.0 403 46.7
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.1e-71 274.6 387 48.3
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.4e-71 273.5 398 47.2
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 5.3e-71 272.3 385 48.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.0e-70 270.4 382 46.9
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.6e-70 270.0 387 47.3
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 4.5e-70 269.2 382 46.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.6e-70 268.5 411 46.2
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 7.6e-70 268.5 394 46.4
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.7e-69 267.3 408 43.9
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.2e-69 266.9 435 45.1
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 2.2e-69 266.9 384 47.7
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.9e-69 266.5 383 48.3
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 3.8e-69 266.2 370 45.1
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 8.4e-69 265.0 401 45.1
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 2.1e-67 260.4 386 45.6
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.8e-66 257.3 390 44.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.3e-66 256.9 381 46.2
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.0e-66 256.5 396 43.7
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.1e-65 254.6 389 44.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.5e-65 254.2 418 43.3
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 2.8e-64 250.0 378 45.0
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 3.7e-64 249.6 375 44.3
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 8.2e-64 248.4 389 43.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.1e-63 248.1 234 59.8
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 5.3e-63 245.7 420 41.0
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.5e-62 244.2 231 59.7
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.5e-62 244.2 433 40.4
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.0e-61 241.5 406 42.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.0e-61 241.5 420 41.7
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.3e-61 241.1 403 43.2
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 2.9e-61 240.0 412 41.0
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.8e-61 239.6 269 53.9
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 4.2e-60 236.1 332 44.9
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 5.5e-60 235.7 369 42.0
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 7.2e-60 235.3 389 41.9
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.2e-59 234.6 319 46.7
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.6e-59 234.2 575 33.9
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.1e-59 233.8 305 47.5
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 3.6e-59 233.0 402 40.3
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 4.6e-59 232.6 431 41.1
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 4.6e-59 232.6 393 40.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 6.7e-58 228.8 395 41.3
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 8.8e-58 228.4 377 43.2
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.5e-57 227.6 253 52.2
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 5.7e-57 225.7 410 40.0
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 9.7e-57 224.9 404 41.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.4e-55 221.1 252 53.2
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.4e-55 221.1 367 41.4
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.4e-55 220.3 421 38.0
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.2e-54 218.0 194 60.8
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 4.5e-54 216.1 196 57.7
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.3e-53 214.5 295 46.4
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.3e-53 214.5 207 58.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 9.4e-52 208.4 426 38.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 9.4e-52 208.4 368 42.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.1e-51 207.2 393 39.7
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 4.7e-51 206.1 505 33.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.1e-50 202.6 380 41.6
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 6.7e-50 202.2 321 48.3
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.2e-48 197.2 368 39.9
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.7e-48 196.4 234 48.7
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 8.2e-48 195.3 158 62.0
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.2e-46 191.4 170 59.4
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 3.8e-45 186.4 300 44.7
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.8e-45 186.4 374 38.8
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 8.5e-45 185.3 195 54.9
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 3.6e-43 179.9 361 38.2
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 6.1e-43 179.1 394 37.3
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.0e-42 178.3 367 38.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.0e-42 178.3 133 66.9
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.8e-42 177.6 361 38.0
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.8e-42 177.6 361 38.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 1.5e-41 174.5 205 48.3
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.4e-39 167.2 374 35.3
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.5e-38 163.3 188 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.7e-33 146.0 205 44.4
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 9.1e-31 138.7 197 45.2
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.6e-30 137.9 362 30.1
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.9e-30 136.0 245 42.0
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 2.2e-29 134.0 352 35.5
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 1.1e-28 131.7 154 49.4
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.1e-28 131.7 362 33.1
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.9e-28 131.0 338 38.2
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.5e-28 130.6 298 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.5e-28 129.4 129 51.9
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 6.1e-27 125.9 195 38.5
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 2.2e-24 117.5 76 76.3
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 3.1e-23 113.6 109 55.0
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.6e-22 111.3 218 38.5
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 6.5e-21 105.9 90 60.0
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.6e-19 100.1 163 42.3
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.0e-18 98.6 82 62.2
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 5.7e-17 92.8 287 36.6
TPR.G36507 Trifolium pratense HOM05D044939 ORTHO05D005937 8.3e-16 89.0 153 43.8
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 3.1e-15 87.0 56 78.6
TPR.G35937 Trifolium pratense HOM05D044939 ORTHO05D005937 2.7e-14 84.0 149 43.6
Psat4g011840 Pisum sativum HOM05D000294 ORTHO05D005937 3.5e-14 83.6 131 46.6
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 7.8e-14 82.4 112 39.3
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.7e-13 81.3 170 33.5
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 2.3e-13 80.9 106 44.3
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 2.3e-13 80.9 309 27.2
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 5.0e-13 79.7 68 58.8
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 5.6e-12 76.3 254 33.5
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 9.5e-12 75.5 205 31.2
BraA08t35622Z Brassica rapa HOM05D005116 ORTHO05D005937 1.2e-11 75.1 328 29.3
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.0e-11 72.4 116 36.2
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 1.0e-10 72.0 53 66.0
Psat0s876g0200 Pisum sativum HOM05D005116 ORTHO05D005937 1.4e-10 71.6 113 43.4
A08p37240 Brassica napus HOM05D005116 ORTHO05D005937 1.8e-10 71.2 327 29.7
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 6.8e-10 69.3 315 26.3
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 6.8e-10 69.3 45 66.7
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 3.4e-09 67.0 55 61.8
TPR.G20540 Trifolium pratense HOM05D005116 ORTHO05D005937 4.4e-09 66.6 45 73.3
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 1.4e-07 61.6 86 41.9
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 1.4e-07 61.6 43 69.8
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 2.4e-07 60.8 84 42.9
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.4e-07 60.8 73 50.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.4e-07 60.8 73 50.7
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 3.2e-07 60.5 84 41.7
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 3.2e-07 60.5 274 29.2
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 5.4e-07 59.7 84 41.7


User provided reference genes

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