Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3F2VKE Arachis hypogaea HOM05D000039 ORTHO05D038935 5.9e-39 163.7 81 100.0
Phvul.001G106600 Phaseolus vulgaris HOM05D000039 ORTHO05D000370 8.1e-12 73.6 80 57.5
VMungo1383G1242 Vigna mungo HOM05D000039 ORTHO05D000370 8.1e-12 73.6 80 57.5
Lj1g0000490 Lotus japonicus HOM05D000039 ORTHO05D000370 2.6e-10 68.6 79 54.4
Glyma.03G007700 Glycine max HOM05D000039 ORTHO05D000370 3.4e-10 68.2 79 55.7
Glyma.03G007800 Glycine max HOM05D000039 ORTHO05D000370 3.4e-10 68.2 79 54.4
Phvul.001G106500 Phaseolus vulgaris HOM05D000039 ORTHO05D000370 3.4e-10 68.2 78 53.8
Medtr7g086870 Medicago truncatula HOM05D000039 ORTHO05D000370 7.5e-10 67.0 78 52.6
VMungo1383G3301 Vigna mungo HOM05D000039 ORTHO05D000370 7.5e-10 67.0 79 53.2
Ca_08323_v3 Cicer arietinum L. HOM05D000039 ORTHO05D000370 9.9e-10 66.6 79 54.4
Gohir.D08G237300 Gossypium hirsutum HOM05D000039 ORTHO05D000370 9.9e-10 66.6 80 51.2
Lj1g0004704 Lotus japonicus HOM05D000039 ORTHO05D000370 9.9e-10 66.6 83 50.6
Medtr7g086820 Medicago truncatula HOM05D000039 ORTHO05D000370 9.9e-10 66.6 79 54.4
Gohir.A08G220700 Gossypium hirsutum HOM05D000039 ORTHO05D000370 1.3e-09 66.2 80 51.2
Gorai.004G252800 Gossypium raimondii HOM05D000039 ORTHO05D000370 1.3e-09 66.2 80 51.2
TPR.G31078 Trifolium pratense HOM05D000039 ORTHO05D000370 1.3e-09 66.2 79 53.2
Cc00_g17810 Coffea canephora HOM05D000039 ORTHO05D000370 2.9e-09 65.1 77 54.5
THA.LOC104827253 Tarenaya hassleriana HOM05D000039 ORTHO05D000370 4.9e-09 64.3 80 48.8
CAN.G551.49 Capsicum annuum HOM05D000039 ORTHO05D000370 6.4e-09 63.9 83 48.2
PGR042G0642 Punica granatum HOM05D000039 ORTHO05D000370 8.3e-09 63.5 82 46.3
Glyma.19G066200 Glycine max HOM05D000039 ORTHO05D000370 1.1e-08 63.2 83 48.2
Hma1.2p1_0075F.1_g039370 Hydrangea macrophylla HOM05D000039 ORTHO05D000370 1.9e-08 62.4 77 51.9
arahy.Tifrunner.gnm1.ann1.4DHT3Z Arachis hypogaea HOM05D000039 ORTHO05D000370 2.4e-08 62.0 83 47.0
TPR.G22847 Trifolium pratense HOM05D000039 ORTHO05D000370 2.4e-08 62.0 81 49.4
EL10Ac5g11687 Beta vulgaris HOM05D000039 ORTHO05D000370 3.2e-08 61.6 77 50.6
Dinv13798 Davidia involucrata HOM05D000039 ORTHO05D000370 3.2e-08 61.6 78 51.3
Peaxi162Scf00062g00127 Petunia axillaris HOM05D000039 ORTHO05D000370 3.2e-08 61.6 80 48.8
arahy.Tifrunner.gnm1.ann1.9Q3NSM Arachis hypogaea HOM05D000039 ORTHO05D000370 4.1e-08 61.2 77 49.4
arahy.Tifrunner.gnm1.ann1.LHU2YI Arachis hypogaea HOM05D000039 ORTHO05D000370 4.1e-08 61.2 77 49.4
Peaxi162Scf00190g01012 Petunia axillaris HOM05D000039 ORTHO05D000370 4.1e-08 61.2 77 50.6
arahy.Tifrunner.gnm1.ann1.D45KPR Arachis hypogaea HOM05D000039 ORTHO05D000370 5.4e-08 60.8 79 49.4
arahy.Tifrunner.gnm1.ann1.DI5QT1 Arachis hypogaea HOM05D000039 ORTHO05D000370 5.4e-08 60.8 79 49.4
PGR042G0561 Punica granatum HOM05D000039 ORTHO05D000370 5.4e-08 60.8 82 46.3
RcHm_v2.0_Chr3g0495951 Rosa chinensis HOM05D000039 ORTHO05D000370 5.4e-08 60.8 80 48.8
Sp7g24030 Schrenkiella parvula HOM05D000039 ORTHO05D000370 5.4e-08 60.8 80 51.2
Thhalv10025781m.g Eutrema salsugineum HOM05D000039 ORTHO05D000370 7.1e-08 60.5 80 51.2
Gorai.007G253300 Gossypium raimondii HOM05D000039 ORTHO05D000370 7.1e-08 60.5 80 50.0
Nitab4.5_0002518g0050 Nicotiana tabacum HOM05D000039 ORTHO05D000370 7.1e-08 60.5 79 48.1
TWI32G0273 Tripterygium wilfordii HOM05D000039 ORTHO05D000370 7.1e-08 60.5 81 46.9
Carub.0007s1494 Capsella rubella HOM05D000039 ORTHO05D000370 9.2e-08 60.1 80 51.2
CARHR233520 Cardamine hirsuta HOM05D000039 ORTHO05D000370 1.2e-07 59.7 80 51.2
Eucgr.A02147 Eucalyptus grandis HOM05D000039 ORTHO05D000370 1.2e-07 59.7 80 47.5
Nitab4.5_0000038g0180 Nicotiana tabacum HOM05D000039 ORTHO05D000370 1.2e-07 59.7 79 48.1
Potri.013G066800 Populus trichocarpa HOM05D000039 ORTHO05D000370 1.2e-07 59.7 78 47.4
Hund15069 Selenicereus undatus HOM05D000039 ORTHO05D000370 1.2e-07 59.7 80 46.2
arahy.Tifrunner.gnm1.ann1.F1NP99 Arachis hypogaea HOM05D000039 ORTHO05D000370 1.6e-07 59.3 81 46.9
BcaC06g32776 Brassica carinata HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 51.2
BcaNung03782 Brassica carinata HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 51.2
A03p56380 Brassica napus HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 51.2
C01p21780 Brassica napus HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 51.2
BraA03t14708Z Brassica rapa HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 51.2
Migut.J01604 Erythranthe guttata HOM05D000039 ORTHO05D000370 1.6e-07 59.3 81 45.7
Gohir.D11G239800 Gossypium hirsutum HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 48.8
Rhsim03G0048900 Rhododendron simsii HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 47.5
RcHm_v2.0_Chr3g0495941 Rosa chinensis HOM05D000039 ORTHO05D000370 1.6e-07 59.3 80 46.2
Aa31LG11G11770 Aethionema arabicum HOM05D000039 ORTHO05D000370 2.1e-07 58.9 80 46.2
AL6G28910 Arabidopsis lyrata HOM05D000039 ORTHO05D000370 2.1e-07 58.9 79 46.8
BcaB01g05157 Brassica carinata HOM05D000039 ORTHO05D000370 2.1e-07 58.9 79 45.6
A03p08510 Brassica napus HOM05D000039 ORTHO05D000370 2.1e-07 58.9 79 45.6
C03p09910 Brassica napus HOM05D000039 ORTHO05D000370 2.1e-07 58.9 79 45.6
BolC3t13479H Brassica oleracea HOM05D000039 ORTHO05D000370 2.1e-07 58.9 79 45.6
BraA03t10174Z Brassica rapa HOM05D000039 ORTHO05D000370 2.1e-07 58.9 79 45.6
Nitab4.5_0004402g0040 Nicotiana tabacum HOM05D000039 ORTHO05D000370 2.1e-07 58.9 83 48.2
CANSAT78G0765 Cannabis sativa HOM05D000039 ORTHO05D000370 2.7e-07 58.5 81 45.7
Eucgr.A02146 Eucalyptus grandis HOM05D000039 ORTHO05D000370 2.7e-07 58.5 78 51.3
Rhsim03G0049000 Rhododendron simsii HOM05D000039 ORTHO05D000370 2.7e-07 58.5 79 45.6
Sp6g26430 Schrenkiella parvula HOM05D000039 ORTHO05D000370 2.7e-07 58.5 79 45.6
Atru.chr2.1541 Acer truncatum HOM05D000039 ORTHO05D000370 3.5e-07 58.2 80 47.5
A01p17300 Brassica napus HOM05D000039 ORTHO05D000370 3.5e-07 58.2 80 50.0
BraA01t01685Z Brassica rapa HOM05D000039 ORTHO05D000370 3.5e-07 58.2 80 50.0
CSS0045892 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 3.5e-07 58.2 79 48.1
Carub.0006s1605 Capsella rubella HOM05D000039 ORTHO05D000370 3.5e-07 58.2 79 45.6
AUR62042267 Chenopodium quinoa HOM05D000039 ORTHO05D000370 3.5e-07 58.2 75 49.3
Thhalv10014171m.g Eutrema salsugineum HOM05D000039 ORTHO05D000370 3.5e-07 58.2 79 45.6
PGSC0003DMG400039106 Solanum tuberosum HOM05D000039 ORTHO05D000370 3.5e-07 58.2 84 44.0
Aa31LG3G370 Aethionema arabicum HOM05D000039 ORTHO05D000370 4.6e-07 57.8 80 48.8
Cfa021292 Carpinus fangiana HOM05D000039 ORTHO05D000370 4.6e-07 57.8 78 48.7
Actinidia03914 Actinidia chinensis HOM05D000039 ORTHO05D000370 6.0e-07 57.4 77 48.1
BcaB05g23280 Brassica carinata HOM05D000039 ORTHO05D000370 6.0e-07 57.4 80 45.0
C07p54610 Brassica napus HOM05D000039 ORTHO05D000370 6.0e-07 57.4 80 51.2
BolC7t45949H Brassica oleracea HOM05D000039 ORTHO05D000370 6.0e-07 57.4 80 51.2
COL.COLO4_20080 Corchorus olitorius HOM05D000039 ORTHO05D000370 6.0e-07 57.4 76 51.3
Rhsim03G0048800 Rhododendron simsii HOM05D000039 ORTHO05D000370 6.0e-07 57.4 80 46.2
AL7G26970 Arabidopsis lyrata HOM05D000039 ORTHO05D000370 7.8e-07 57.0 80 50.0
AL7G26980 Arabidopsis lyrata HOM05D000039 ORTHO05D000370 7.8e-07 57.0 80 50.0
BcaB04g19362 Brassica carinata HOM05D000039 ORTHO05D000370 7.8e-07 57.0 82 46.3
BcaC03g13546 Brassica carinata HOM05D000039 ORTHO05D000370 7.8e-07 57.0 79 45.6
C02p09380 Brassica napus HOM05D000039 ORTHO05D000370 7.8e-07 57.0 79 45.6
FvH4_2g05370 Fragaria vesca HOM05D000039 ORTHO05D000370 7.8e-07 57.0 76 47.4
FAN15G0195 Fragaria x ananassa HOM05D000039 ORTHO05D000370 7.8e-07 57.0 76 47.4
FAN24G0203 Fragaria x ananassa HOM05D000039 ORTHO05D000370 7.8e-07 57.0 76 47.4
Pp3c8_1520 Physcomitrium patens HOM05D000039 ORTHO05D000370 7.8e-07 57.0 75 48.0
Solyc09g072700.4 Solanum lycopersicum HOM05D000039 ORTHO05D000370 7.8e-07 57.0 79 46.8
Solyc12g009950.2 Solanum lycopersicum HOM05D000039 ORTHO05D000370 7.8e-07 57.0 83 44.6
CSS0020612 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 1.0e-06 56.6 79 48.1
AUR62036528 Chenopodium quinoa HOM05D000039 ORTHO05D000370 1.0e-06 56.6 75 46.7
DCAR_020647 Daucus carota HOM05D000039 ORTHO05D000370 1.0e-06 56.6 82 46.3
Lalb_Chr14g0364911 Lupinus albus HOM05D000039 ORTHO05D000370 1.0e-06 56.6 69 46.4
ATR0579G078 Amborella trichopoda HOM05D000039 ORTHO05D000370 1.3e-06 56.2 82 45.1
BolC2t06844H Brassica oleracea HOM05D000039 ORTHO05D000370 1.3e-06 56.2 79 45.6
CARHR195350 Cardamine hirsuta HOM05D000039 ORTHO05D000370 1.3e-06 56.2 80 45.0
Pp3c3_34630 Physcomitrium patens HOM05D000039 ORTHO05D000370 1.3e-06 56.2 75 46.7
THA.LOC104801750 Tarenaya hassleriana HOM05D000039 ORTHO05D000370 1.3e-06 56.2 80 46.2
BcaB01g04918 Brassica carinata HOM05D000039 ORTHO05D000370 1.7e-06 55.8 79 44.3
Ciclev10023906m.g Citrus clementina HOM05D000039 ORTHO05D000370 1.7e-06 55.8 79 46.8
Cc06_g21030 Coffea canephora HOM05D000039 ORTHO05D000370 1.7e-06 55.8 80 46.2
MD14G1010300 Malus domestica HOM05D000039 ORTHO05D000370 1.7e-06 55.8 81 44.4
Sc01g0005880 Simmondsia chinensis HOM05D000039 ORTHO05D000370 1.7e-06 55.8 78 47.4
BcaC01g04395 Brassica carinata HOM05D000039 ORTHO05D000370 2.3e-06 55.5 72 48.6
C03p40590 Brassica napus HOM05D000039 ORTHO05D000370 2.3e-06 55.5 72 48.6
AUR62036529 Chenopodium quinoa HOM05D000039 ORTHO05D000370 2.3e-06 55.5 75 48.0
Prupe.7G016500 Prunus persica HOM05D000039 ORTHO05D000370 2.3e-06 55.5 76 46.1
SalBow6G3805 Salvia bowleyana HOM05D000039 ORTHO05D000370 2.3e-06 55.5 80 45.0
SalBow6G6530 Salvia bowleyana HOM05D000039 ORTHO05D000370 2.3e-06 55.5 80 45.0
THA.LOC104821377 Tarenaya hassleriana HOM05D000039 ORTHO05D000370 2.3e-06 55.5 78 47.4
CANSAT78G1550 Cannabis sativa HOM05D000039 ORTHO05D000370 3.0e-06 55.1 79 45.6
MBI04_g26124_MAGBIO Magnolia biondii HOM05D000039 ORTHO05D000370 3.0e-06 55.1 82 43.9
EL10Ac5g11688 Beta vulgaris HOM05D000039 ORTHO05D000370 3.9e-06 54.7 67 49.3
BcaC03g15035 Brassica carinata HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
A02p04500 Brassica napus HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
C02p17490 Brassica napus HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
C02p25830 Brassica napus HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
BolC2t07872H Brassica oleracea HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
BolC2t08657H Brassica oleracea HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
BraA02t05411Z Brassica rapa HOM05D000039 ORTHO05D000370 3.9e-06 54.7 79 44.3
AUR62043129 Chenopodium quinoa HOM05D000039 ORTHO05D038935 3.9e-06 54.7 66 48.5
Cc09_g05920 Coffea canephora HOM05D000039 ORTHO05D000370 3.9e-06 54.7 80 45.0
AT5G17820 Arabidopsis thaliana HOM05D000039 ORTHO05D000370 5.1e-06 54.3 79 44.3
A03p33350 Brassica napus HOM05D000039 ORTHO05D000370 5.1e-06 54.3 82 45.1
BolC3t16324H Brassica oleracea HOM05D000039 ORTHO05D000370 5.1e-06 54.3 82 45.1
CSS0017484 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 5.1e-06 54.3 79 45.6
CSS0040539 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 5.1e-06 54.3 79 45.6
HanXRQChr10g0296251 Helianthus annuus HOM05D000039 ORTHO05D000370 5.1e-06 54.3 83 44.6
BraA03t12506Z Brassica rapa HOM05D000039 ORTHO05D000370 6.6e-06 53.9 82 45.1
CSS0009312 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D000370 6.6e-06 53.9 79 45.6
Phvul.004G053800 Phaseolus vulgaris HOM05D000039 ORTHO05D000370 6.6e-06 53.9 81 39.5
Peaxi162Scf00388g00041 Petunia axillaris HOM05D000039 ORTHO05D000370 8.6e-06 53.5 75 48.0
PGSC0003DMG400024285 Solanum tuberosum HOM05D000039 ORTHO05D000370 8.6e-06 53.5 78 44.9


User provided reference genes

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