Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 0.0e+00 1509.6 861 100.0
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 0.0e+00 1208.7 861 75.5
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 0.0e+00 1204.9 858 75.9
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 0.0e+00 1203.7 853 76.2
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 0.0e+00 1201.0 863 75.1
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 0.0e+00 1199.1 860 75.1
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 0.0e+00 1198.0 860 75.7
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 0.0e+00 1187.9 860 74.4
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 0.0e+00 1179.1 860 74.1
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 0.0e+00 1145.6 861 72.9
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 2.4e-308 1062.0 860 66.0
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 3.9e-306 1054.7 896 64.6
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 5.1e-306 1054.3 859 66.6
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 7.9e-299 1030.4 857 65.8
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 1.0e-298 1030.0 858 65.3
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 6.9e-295 1017.3 860 64.4
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 9.0e-295 1016.9 626 96.8
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.2e-294 1016.5 861 64.0
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.3e-293 1013.1 861 63.9
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 8.4e-293 1010.4 861 64.1
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.2e-292 1008.4 861 64.5
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 7.1e-292 1007.3 859 63.7
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 9.3e-292 1006.9 860 63.6
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.7e-291 1005.4 825 66.4
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 7.9e-291 1003.8 859 63.7
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 8.7e-290 1000.3 859 63.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 8.7e-290 1000.3 855 64.2
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.5e-289 999.6 855 64.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.9e-289 999.2 868 63.0
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 2.2e-288 995.7 855 64.0
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.0e-285 986.9 858 63.9
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 2.9e-285 985.3 863 62.5
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.9e-284 982.6 864 62.2
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 3.9e-282 974.9 855 62.1
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 8.8e-282 973.8 859 62.7
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 5.7e-281 971.1 855 61.8
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 7.4e-281 970.7 860 61.5
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 2.2e-280 969.1 826 64.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.8e-280 968.8 861 62.6
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 3.7e-280 968.4 859 62.5
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.5e-278 963.0 855 60.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 7.7e-278 960.7 862 62.5
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 1.3e-277 959.9 856 62.6
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 2.9e-277 958.7 860 61.9
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 3.2e-276 955.3 658 81.8
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 9.4e-276 953.7 859 61.1
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.2e-275 953.4 853 63.0
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.3e-274 949.1 862 60.7
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 4.4e-273 944.9 932 57.8
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 1.3e-272 943.3 862 60.2
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 2.2e-272 942.6 862 60.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 3.1e-271 938.7 853 64.5
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 3.5e-270 935.3 863 58.9
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.3e-269 933.3 860 60.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.3e-269 933.3 860 66.3
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 5.0e-269 931.4 862 60.9
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.4e-268 929.9 861 66.4
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 4.2e-268 928.3 870 59.3
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 4.2e-268 928.3 869 61.9
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.6e-267 926.4 858 59.7
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 1.6e-267 926.4 862 65.9
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 4.7e-267 924.9 883 58.2
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.0e-266 923.7 881 59.3
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 3.0e-266 922.2 867 58.5
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 3.9e-266 921.8 864 59.1
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 5.2e-266 921.4 795 63.3
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 2.0e-265 919.5 858 59.0
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 2.2e-264 916.0 854 59.6
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 8.2e-264 914.1 857 58.2
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.1e-263 913.7 859 58.4
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.1e-263 913.7 856 61.4
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 2.6e-262 909.1 861 58.8
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 7.7e-262 907.5 893 57.7
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.7e-261 906.4 858 62.9
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 5.0e-261 904.8 853 63.1
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 8.5e-261 904.0 857 57.5
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.5e-260 902.5 793 62.2
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 9.4e-260 900.6 861 57.3
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 6.1e-259 897.9 857 57.5
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 2.3e-258 896.0 857 57.5
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.2e-257 893.6 857 57.4
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 4.4e-257 891.7 857 56.9
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 7.5e-257 891.0 857 57.3
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.7e-256 889.8 861 57.1
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.1e-252 877.1 873 56.4
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 6.8e-250 867.8 900 54.8
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.6e-249 865.9 869 57.2
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 9.8e-249 864.0 959 52.7
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.3e-248 863.6 794 59.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.6e-227 793.5 865 51.7
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.7e-224 783.5 861 50.6
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 4.1e-223 778.9 857 53.1
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 4.4e-209 732.3 732 56.1
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.0e-205 721.1 901 47.1
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.7e-205 720.3 859 49.0
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.3e-203 714.1 859 52.0
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.8e-187 659.1 595 60.7
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 2.0e-156 557.4 800 41.6
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 9.7e-156 555.1 879 41.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 5.0e-152 542.7 829 41.3
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.8e-139 500.4 916 35.8
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.7e-136 491.1 542 52.4
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.1e-134 484.2 818 38.3
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 6.8e-133 479.2 447 59.3
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 5.4e-130 469.5 364 67.6
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 2.3e-125 454.1 868 34.1
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 3.7e-123 446.8 322 72.4
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 7.0e-122 442.6 491 50.1
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 4.0e-101 373.6 309 64.1
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.4e-93 347.8 315 59.0
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.9e-92 342.4 474 45.4
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.9e-90 338.2 315 55.6
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.3e-90 335.9 311 59.5
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 9.6e-79 299.3 220 76.4
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.5e-71 274.6 241 63.9
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 8.5e-51 206.5 851 29.0
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 3.7e-46 191.0 207 55.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.4e-42 176.4 163 58.3
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.2e-41 176.0 91 95.6
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.6e-41 174.5 355 33.0
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 6.1e-41 173.7 884 23.5
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 2.0e-36 158.7 117 76.1
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.7e-35 155.6 125 65.6
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 3.8e-35 154.5 118 67.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 6.5e-35 153.7 86 93.0
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 4.8e-30 137.5 142 59.2
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.8e-29 135.6 101 72.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 5.3e-29 134.0 131 51.1
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 7.0e-29 133.7 180 49.4
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 8.8e-24 116.7 139 49.6
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 8.8e-24 116.7 139 49.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.7e-22 111.3 70 82.9
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 8.5e-19 100.1 134 41.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.2e-14 85.5 79 57.0
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 9.5e-10 70.1 69 56.5
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.3e-08 65.5 47 72.3
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 9.8e-07 60.1 116 33.6
arahy.Tifrunner.gnm1.ann1.XAY9LQ Arachis hypogaea HOM05D000137 ORTHO05D086274 8.3e-06 57.0 41 70.7


User provided reference genes

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