Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 0.0e+00 2533.1 1409 100.0
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 0.0e+00 2079.7 1464 83.2
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.7e-128 465.3 1906 30.7
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.2e-105 389.4 1749 31.0
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 2.1e-75 288.9 1728 28.0
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.5e-60 238.8 651 33.9
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 3.3e-60 238.4 2282 23.7
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.1e-58 231.9 696 33.0
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.5e-52 213.0 194 58.2
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.6e-51 209.5 204 58.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 2.8e-51 208.8 154 71.4
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 4.8e-51 208.0 190 56.8
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.2e-48 199.1 216 53.2
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 3.2e-47 195.3 240 49.2
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 1.6e-46 193.0 146 64.4
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 3.5e-46 191.8 196 56.1
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.8e-45 189.5 144 63.9
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 2.5e-44 185.7 142 64.1
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 2.1e-43 182.6 221 49.3
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.1e-43 182.6 146 65.1
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 3.7e-43 181.8 144 62.5
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 4.8e-43 181.4 144 62.5
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.2e-43 181.0 145 63.4
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 8.1e-43 180.6 171 54.4
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.1e-42 180.3 601 31.9
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.1e-42 180.3 244 44.7
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 1.4e-42 179.9 399 37.3
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.4e-42 179.1 145 63.4
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.0e-42 178.3 214 47.2
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 9.0e-42 177.2 159 60.4
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 9.0e-42 177.2 388 35.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.2e-41 176.8 243 45.7
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.0e-41 176.0 221 45.7
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 2.6e-41 175.6 212 50.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 2.6e-41 175.6 215 46.5
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 4.5e-41 174.9 147 59.2
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.0e-40 173.7 231 46.8
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.3e-40 173.3 142 59.2
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.2e-40 172.6 314 37.9
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 3.8e-40 171.8 258 43.4
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 6.5e-40 171.0 225 44.4
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 8.4e-40 170.6 410 34.6
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 8.4e-40 170.6 203 47.8
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 2.5e-39 169.1 229 43.7
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 7.1e-39 167.5 238 43.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 9.3e-39 167.2 1376 25.6
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 1.6e-38 166.4 227 44.1
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.6e-38 166.4 143 60.1
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.1e-38 166.0 228 44.7
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.1e-38 166.0 203 46.3
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.0e-38 164.5 228 44.3
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 6.0e-38 164.5 209 45.9
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.3e-37 163.3 233 42.9
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 1.8e-37 162.9 151 56.3
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 1.8e-37 162.9 545 30.6
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 8.7e-37 160.6 214 47.7
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.5e-36 159.8 196 43.4
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 1.9e-36 159.5 211 44.5
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.9e-36 159.5 222 40.5
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.9e-36 159.5 158 55.1
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 3.3e-36 158.7 251 43.8
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 4.3e-36 158.3 139 53.2
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.7e-36 157.9 144 52.8
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 5.7e-36 157.9 217 44.7
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 5.7e-36 157.9 239 43.5
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 7.4e-36 157.5 411 31.6
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 7.4e-36 157.5 142 52.1
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 9.6e-36 157.1 385 34.0
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 2.1e-35 156.0 146 50.0
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.1e-35 156.0 219 41.1
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.1e-35 156.0 228 41.7
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 3.7e-35 155.2 218 44.0
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 4.8e-35 154.8 146 50.0
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 4.8e-35 154.8 220 45.9
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 6.3e-35 154.5 146 50.0
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 6.3e-35 154.5 397 33.5
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 8.2e-35 154.1 208 46.6
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 1.4e-34 153.3 146 48.6
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.4e-34 152.5 330 32.4
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 5.3e-34 151.4 179 47.5
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 5.3e-34 151.4 217 47.9
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 2.6e-33 149.1 182 46.7
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.4e-33 148.7 330 33.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.5e-33 148.3 144 47.9
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 7.6e-33 147.5 211 44.1
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.0e-32 147.1 154 47.4
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 8.4e-32 144.1 266 33.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 7.2e-31 141.0 219 42.5
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.2e-30 140.2 240 40.4
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.6e-30 139.8 132 49.2
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 2.1e-30 139.4 140 46.4
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 6.1e-30 137.9 197 40.6
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 2.3e-29 136.0 135 47.4
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 3.0e-29 135.6 218 38.5
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 5.1e-29 134.8 141 46.1
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 5.1e-29 134.8 127 55.9
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 1.1e-28 133.7 133 47.4
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.9e-28 132.9 200 41.0
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 2.5e-28 132.5 200 42.5
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.3e-27 130.2 216 38.4
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 2.2e-27 129.4 248 36.7
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.7e-27 128.6 130 46.2
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.1e-26 127.1 201 42.8
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 2.0e-25 122.9 146 40.4
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 7.7e-25 120.9 145 46.2
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 1.7e-24 119.8 146 42.5
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 3.8e-24 118.6 160 38.8
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 3.8e-24 118.6 199 36.2
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 3.8e-24 118.6 204 35.3
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 8.5e-24 117.5 132 47.7
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 3.2e-23 115.5 165 42.4
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.6e-22 113.2 1186 24.8
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 3.6e-22 112.1 244 36.1
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 3.6e-22 112.1 108 57.4
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 3.0e-21 109.0 252 33.3
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.8e-18 99.8 173 34.7
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 5.3e-18 98.2 185 36.2
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.0e-16 91.7 107 43.0
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.9e-15 89.7 174 35.1
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.5e-15 89.4 179 38.0
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 2.7e-14 85.9 156 37.2
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.7e-12 78.2 1491 23.6
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 4.1e-10 72.0 73 49.3
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 2.6e-09 69.3 67 49.3
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.9e-09 68.2 1378 21.9
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 3.8e-08 65.5 174 31.6
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 5.0e-08 65.1 101 34.7
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 3.2e-07 62.4 128 36.7
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 9.4e-07 60.8 126 35.7
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 9.4e-07 60.8 98 28.6


User provided reference genes

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