Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 3080.0 1573 100.0
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 2475.3 1646 81.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1721.1 1620 59.6
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1716.8 1580 61.5
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1714.9 1602 59.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1714.9 1594 60.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1711.0 1601 60.6
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1644.8 1583 59.0
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1628.2 1571 60.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1615.9 1587 58.7
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1518.4 1580 56.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1356.7 1612 50.4
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1354.7 1606 50.6
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1332.0 1543 50.8
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1320.4 1587 49.1
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1303.5 1583 50.2
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1302.3 1588 48.6
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1300.8 1583 50.0
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1300.0 1596 48.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1298.9 1596 48.4
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1293.9 1603 48.5
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1291.6 1596 48.4
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1288.5 1622 48.9
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1287.3 1613 48.4
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1255.0 1583 48.8
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1249.2 1596 47.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1239.2 1672 46.7
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1238.0 1571 47.7
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1231.9 1584 47.9
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1220.7 1600 47.2
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1209.1 1587 47.7
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1207.2 1568 47.1
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1192.6 1592 47.3
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1191.0 1569 48.2
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1190.3 1615 45.1
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1189.5 1604 45.2
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1184.5 1660 44.9
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1182.9 1574 46.6
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1182.5 1615 46.6
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1181.4 1607 45.5
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1179.5 1536 47.0
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1178.7 1580 46.6
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1168.3 1574 46.0
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1168.3 1615 45.3
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1164.8 1425 48.9
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1154.8 1611 44.6
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1152.1 1604 44.6
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1151.0 1600 45.1
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1149.8 1598 44.5
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1146.7 1593 44.4
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1145.2 1597 44.5
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1134.0 1600 44.8
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1131.7 1594 44.5
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1125.5 1576 44.9
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1116.7 1631 43.7
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1110.9 1593 44.4
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1110.5 1648 44.0
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1105.9 1589 43.9
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1100.9 1559 44.1
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1097.4 1582 43.9
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1088.6 1575 43.3
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1087.0 1600 44.6
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1084.3 1591 43.6
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1083.6 1704 42.8
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1079.7 1592 43.2
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1079.3 1593 43.6
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1078.5 1604 43.2
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1078.2 1644 41.9
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 1.1e-311 1074.3 1591 43.3
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 2.2e-311 1073.2 1593 43.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 2.2e-310 1069.7 1591 43.1
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 5.1e-304 1048.5 1593 42.1
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.8e-301 1040.0 1565 42.6
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 4.2e-298 1028.9 1570 42.7
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 2.0e-292 1010.0 1623 40.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 4.8e-286 988.8 1570 41.8
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 3.3e-271 939.5 1347 44.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.2e-263 914.4 1584 38.1
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 1.4e-245 854.4 1214 45.6
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-245 854.4 1196 45.2
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 4.3e-242 842.8 1259 42.3
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.4e-239 833.2 1320 41.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 5.0e-235 819.3 1387 39.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 9.5e-226 788.5 858 52.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 9.9e-215 751.9 763 53.2
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 4.2e-213 746.5 734 55.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 3.4e-207 726.9 1231 40.9
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 7.1e-197 692.6 1540 34.0
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 5.3e-192 676.4 1048 42.9
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 7.4e-186 656.0 808 50.4
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 3.1e-160 570.9 1042 39.3
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.4e-154 550.4 1561 31.0
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.4e-144 518.8 541 54.5
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 4.7e-140 503.8 453 60.7
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 6.1e-140 503.4 1632 28.4
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.6e-134 483.4 463 56.6
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.4e-128 463.8 682 39.3
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.0e-126 459.5 1591 28.2
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 4.4e-122 444.1 554 48.4
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 9.5e-117 426.4 562 46.6
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 5.2e-115 420.6 360 61.4
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 2.0e-114 418.7 405 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 3.3e-93 348.2 1226 28.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.9e-81 308.5 418 41.9
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.4e-80 305.4 283 58.3
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 3.3e-77 295.0 382 50.3
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 3.0e-70 271.9 374 42.5
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.3e-67 261.2 427 41.0
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.8e-60 238.0 159 72.3
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-53 216.9 146 74.7
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 4.1e-51 208.4 461 36.2
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.5e-49 201.1 138 68.8
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.2e-47 196.8 172 60.5
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 7.4e-45 187.6 258 45.3
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 1.3e-44 186.8 146 65.1
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-44 186.4 148 63.5
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.2e-44 184.1 316 39.6
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.4e-43 183.3 244 47.5
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 4.5e-42 178.3 180 54.4
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 5.5e-40 171.4 190 52.6
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 4.0e-38 165.2 436 33.0
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.5e-37 163.3 550 28.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.3e-33 150.2 328 34.5
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 2.7e-31 142.5 163 49.1
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 4.7e-31 141.7 205 44.4
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 8.8e-30 137.5 189 43.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.4e-27 130.2 91 72.5
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.8e-27 129.8 89 76.4
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 5.9e-26 124.8 287 29.6
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 1.7e-25 123.2 135 49.6
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 3.2e-24 119.0 860 22.8
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 4.7e-23 115.2 105 57.1
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 6.1e-23 114.8 85 65.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 5.7e-21 108.2 81 64.2
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 7.0e-19 101.3 131 49.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 2.7e-18 99.4 88 56.8
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 7.8e-18 97.8 155 40.6
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 1.3e-17 97.1 165 42.4
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.7e-17 96.7 617 22.7
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 3.8e-17 95.5 164 40.2
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 5.0e-17 95.1 250 33.6
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.5e-16 92.8 70 67.1
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.3e-16 91.3 162 41.4
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 7.3e-16 91.3 65 69.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 4.0e-14 85.5 90 50.0
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 7.5e-13 81.3 144 42.4
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.3e-12 80.5 530 22.6
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.9e-12 79.3 146 39.0
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 4.9e-12 78.6 92 43.5
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 8.3e-12 77.8 146 39.0
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.3e-12 77.8 115 40.9
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 1.8e-11 76.6 60 60.0
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 7.0e-11 74.7 110 43.6
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.6e-10 73.6 110 42.7
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 2.7e-10 72.8 97 45.4
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 4.6e-10 72.0 97 45.4
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 6.6e-09 68.2 92 41.3
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 8.6e-09 67.8 77 45.5
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-06 60.1 145 32.4
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 2.3e-06 59.7 57 56.1
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 6.8e-06 58.2 68 48.5


User provided reference genes

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