Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 2.7e-65 251.9 131 100.0
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 3.9e-64 248.1 131 98.5
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 4.4e-44 181.4 130 75.4
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 5.8e-44 181.0 132 75.0
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 2.9e-43 178.7 131 73.3
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 7.1e-42 174.1 130 72.3
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 1.6e-41 172.9 130 71.5
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 1.7e-40 169.5 132 70.5
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 3.3e-39 165.2 133 70.7
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 4.3e-39 164.9 131 68.7
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 7.3e-39 164.1 131 69.5
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.6e-38 162.9 133 69.2
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 4.4e-36 154.8 131 66.4
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.7e-35 152.9 133 66.9
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 4.2e-26 121.7 119 61.3
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.6e-25 119.8 115 60.9
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.6e-25 119.8 115 60.9
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 1.6e-25 119.8 115 60.9
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 6.0e-25 117.9 87 71.3
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 6.0e-25 117.9 87 71.3
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 6.0e-25 117.9 86 73.3
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 7.9e-25 117.5 87 71.3
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 3.0e-24 115.5 86 72.1
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-24 115.5 86 72.1
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-24 115.5 86 72.1
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-24 115.5 86 72.1
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 8.7e-24 114.0 88 68.2
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 8.7e-24 114.0 86 70.9
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 8.7e-24 114.0 81 67.9
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 9.6e-23 110.5 84 65.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.8e-22 109.0 89 64.0
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 2.8e-22 109.0 95 65.3
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 3.7e-22 108.6 72 69.4
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 4.8e-22 108.2 111 56.8
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 8.1e-22 107.5 90 64.4
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 8.1e-22 107.5 90 64.4
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 8.1e-22 107.5 90 64.4
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.1e-21 107.1 89 61.8
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 1.1e-21 107.1 81 66.7
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 2.4e-21 105.9 89 61.8
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.4e-21 105.9 92 62.0
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.4e-21 105.9 89 61.8
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 2.4e-21 105.9 89 61.8
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 3.1e-21 105.5 96 59.4
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 3.1e-21 105.5 78 66.7
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 5.3e-21 104.8 137 50.4
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 6.9e-21 104.4 72 73.6
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 6.9e-21 104.4 89 60.7
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 9.0e-21 104.0 90 61.1
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 1.2e-20 103.6 90 64.4
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.2e-20 103.6 70 72.9
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 1.5e-20 103.2 81 66.7
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 2.0e-20 102.8 90 60.0
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 2.0e-20 102.8 72 68.1
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 2.6e-20 102.4 94 60.6
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 2.6e-20 102.4 94 60.6
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.6e-20 102.4 70 71.4
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.6e-20 102.4 70 71.4
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 5.8e-20 101.3 83 63.9
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 5.8e-20 101.3 72 66.7
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 7.6e-20 100.9 72 66.7
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 1.0e-19 100.5 66 74.2
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 1.3e-19 100.1 88 58.0
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 1.3e-19 100.1 88 58.0
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.2e-19 99.4 87 59.8
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 3.8e-19 98.6 70 68.6
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 4.9e-19 98.2 70 70.0
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 6.5e-19 97.8 61 77.0
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 6.5e-19 97.8 89 59.6
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 1.1e-18 97.1 71 64.8
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.9e-18 96.3 89 56.2
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.9e-18 96.3 71 64.8
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 9.3e-18 94.0 73 65.8
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.7e-17 92.4 66 66.7
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 9.6e-15 84.0 78 56.4
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 1.3e-14 83.6 57 68.4
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 4.8e-14 81.6 58 65.5
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 4.8e-14 81.6 66 56.1
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 4.1e-13 78.6 78 55.1
Psat2g025600 Pisum sativum HOM05D000540 ORTHO05D008105 1.7e-11 73.2 70 58.6
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 3.8e-11 72.0 56 57.1
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 5.0e-11 71.6 57 56.1
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.1e-10 70.5 41 80.5
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 1.1e-10 70.5 56 57.1
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 1.4e-10 70.1 56 55.4
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 55.4
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 1.9e-10 69.7 56 57.1
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 2.5e-10 69.3 55 56.4
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 2.5e-10 69.3 56 53.6
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 3.2e-10 68.9 56 53.6
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 5.5e-10 68.2 56 57.1
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 5.5e-10 68.2 56 57.1
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-10 67.8 56 55.4
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 7.2e-10 67.8 55 54.5
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 9.3e-10 67.4 70 48.6
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.2e-09 67.0 58 55.2
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 1.6e-09 66.6 45 64.4
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.1e-09 66.2 78 48.7
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 2.7e-09 65.9 56 51.8
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 3.5e-09 65.5 55 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 4.6e-09 65.1 70 50.0
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 4.6e-09 65.1 70 50.0
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 4.6e-09 65.1 54 50.0
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 4.6e-09 65.1 46 60.9
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 6.1e-09 64.7 67 52.2
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.0e-08 63.9 48 60.4
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 1.8e-08 63.2 90 45.6
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 1.8e-08 63.2 56 51.8
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 3.0e-08 62.4 66 51.5
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 3.0e-08 62.4 50 60.0
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 6.7e-08 61.2 73 46.6
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 6.7e-08 61.2 56 51.8
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 6.7e-08 61.2 56 51.8
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 6.7e-08 61.2 53 54.7
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 5.7e-07 58.2 44 56.8
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 7.4e-07 57.8 45 55.6
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 9.7e-07 57.4 34 76.5
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 1.6e-06 56.6 66 54.5
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 2.2e-06 56.2 69 46.4
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 2.8e-06 55.8 45 51.1
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 3.7e-06 55.5 88 45.5
SHI36893 Sapria himalayana HOM05D000540 ORTHO05D008105 4.8e-06 55.1 44 54.5
SHI37890 Sapria himalayana HOM05D000540 ORTHO05D008105 4.8e-06 55.1 53 52.8
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 6.3e-06 54.7 63 47.6
SHI40537 Sapria himalayana HOM05D000540 ORTHO05D008105 8.2e-06 54.3 45 55.6


User provided reference genes

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