Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 6.7e-123 444.1 239 100.0
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 3.3e-122 441.8 239 99.2
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 1.2e-95 353.6 239 75.3
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 5.9e-87 324.7 239 71.1
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.0e-86 323.9 240 70.8
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 6.5e-86 321.2 240 70.4
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 7.2e-85 317.8 237 70.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 7.5e-82 307.8 240 67.5
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 2.8e-81 305.8 246 65.0
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 3.7e-81 305.4 241 72.6
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 4.9e-81 305.1 229 72.5
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 1.4e-80 303.5 237 65.4
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 2.0e-79 299.7 247 67.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 3.5e-79 298.9 240 66.7
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 3.5e-79 298.9 247 66.4
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.7e-78 296.6 239 67.4
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 3.8e-78 295.4 237 62.9
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 5.0e-78 295.0 236 62.7
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 4.3e-77 292.0 237 62.4
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 5.6e-77 291.6 238 62.6
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 7.3e-77 291.2 236 66.9
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.6e-76 290.0 239 66.9
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 2.1e-76 289.7 241 62.2
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 8.0e-76 287.7 234 66.2
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 1.0e-75 287.3 233 62.2
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 2.3e-75 286.2 240 62.9
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.3e-75 286.2 235 64.3
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 8.9e-75 284.3 233 68.2
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 1.5e-74 283.5 238 61.8
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 2.6e-74 282.7 238 62.2
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 5.8e-74 281.6 231 68.0
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 9.8e-74 280.8 248 58.9
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.3e-73 280.4 232 61.6
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 8.3e-73 277.7 230 64.3
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 7.0e-72 274.6 236 59.3
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.2e-72 274.2 243 60.1
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 9.2e-72 274.2 230 58.7
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.6e-71 273.5 242 62.4
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.7e-71 272.7 230 62.2
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 3.5e-71 272.3 230 64.3
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 3.5e-71 272.3 236 64.4
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.6e-71 271.9 230 63.5
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 4.6e-71 271.9 231 61.0
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 7.8e-71 271.2 230 61.7
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 7.8e-71 271.2 238 63.4
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.0e-70 270.8 239 63.2
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.3e-70 270.4 243 59.7
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.3e-70 270.4 240 60.4
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.7e-70 270.0 242 61.6
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 2.3e-70 269.6 238 63.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.3e-70 269.6 228 58.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 6.6e-70 268.1 239 61.5
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.6e-70 267.7 229 65.1
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.5e-69 266.9 244 60.2
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.5e-69 266.9 230 64.3
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.9e-69 266.5 242 61.2
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 1.9e-69 266.5 243 60.1
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.9e-69 266.5 242 60.7
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-69 266.2 243 60.1
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-69 266.2 244 59.8
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 3.3e-69 265.8 239 59.8
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.2e-68 263.8 246 60.2
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 1.6e-68 263.5 243 59.7
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 3.6e-68 262.3 239 57.3
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 6.2e-68 261.5 245 59.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.2e-68 261.5 234 59.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 3.1e-67 259.2 251 57.8
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 3.1e-67 259.2 240 58.3
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 8.9e-67 257.7 246 60.2
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 3.4e-66 255.8 244 58.6
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.7e-65 253.4 228 61.8
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 6.4e-65 251.5 250 56.0
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 8.3e-65 251.1 241 60.6
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 8.3e-65 251.1 239 59.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.1e-64 250.8 253 58.9
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.9e-64 250.0 234 56.8
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 5.4e-64 248.4 230 57.0
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 7.0e-64 248.1 238 55.9
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 4.6e-63 245.4 248 56.0
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.3e-62 243.8 258 57.8
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 2.3e-62 243.0 351 45.3
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 5.0e-62 241.9 239 58.2
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 6.6e-62 241.5 239 58.2
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.5e-61 239.6 239 57.7
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 9.5e-61 237.7 238 56.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.1e-59 234.2 243 53.9
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.3e-59 233.0 222 57.2
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.2e-58 230.7 252 54.0
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.6e-58 229.6 271 50.6
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 5.8e-58 228.4 265 52.5
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.9e-57 225.3 247 53.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.2e-55 220.7 235 54.0
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 6.6e-54 214.9 190 64.7
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 2.1e-52 209.9 226 50.4
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 2.1e-52 209.9 205 53.7
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.8e-51 206.8 226 47.8
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 3.1e-51 206.1 226 48.2
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 3.1e-51 206.1 231 48.9
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 5.2e-51 205.3 228 47.4
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 3.2e-48 196.1 248 47.6
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 5.4e-48 195.3 226 46.0
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.7e-47 193.0 234 52.6
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.6e-46 188.3 228 45.6
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.6e-46 188.3 228 45.6
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 5.2e-43 178.7 175 50.3
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 2.6e-42 176.4 234 41.9
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.7e-41 173.7 236 46.6
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 3.8e-41 172.6 161 52.2
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 3.8e-41 172.6 161 52.2
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.1e-39 166.8 208 45.7
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 6.6e-38 161.8 145 67.6
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.3e-36 157.5 227 39.2
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.0e-34 150.2 229 46.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 3.8e-33 146.0 133 58.6
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 5.1e-30 135.6 229 33.6
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 2.8e-28 129.8 126 55.6
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 6.2e-28 128.6 239 41.8
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 4.9e-25 119.0 234 34.2
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 9.3e-24 114.8 233 33.0
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-20 104.4 89 55.1
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.3e-20 104.4 129 47.3
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 2.8e-20 103.2 114 47.4
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-18 97.8 83 61.4
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 3.4e-18 96.3 174 34.5
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 3.9e-14 82.8 210 32.9
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 8.7e-14 81.6 146 36.3
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 9.7e-13 78.2 125 36.0
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 2.2e-12 77.0 122 37.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 2.2e-12 77.0 122 37.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-11 74.7 122 36.9
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.1e-11 74.7 122 36.9
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 4.1e-11 72.8 122 36.1
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.6e-10 70.1 45 62.2
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 1.3e-09 67.8 292 26.7
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.9e-08 63.9 67 47.8
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 5.5e-08 62.4 35 80.0
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-07 60.8 36 75.0
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-07 60.8 36 75.0
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-07 60.8 36 75.0
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.6e-07 60.8 36 75.0
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 3.6e-07 59.7 93 40.9
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.6e-07 59.3 36 72.2
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.0e-06 58.2 110 45.5
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 2.3e-06 57.0 36 69.4


User provided reference genes

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