Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3CFA1R Arachis hypogaea HOM05D004050 ORTHO05D013487 2.8e-17 90.9 46 100.0
arahy.Tifrunner.gnm1.ann1.NKMC5K Arachis hypogaea HOM05D004050 ORTHO05D013487 2.9e-14 80.9 46 89.1
arahy.Tifrunner.gnm1.ann1.QC3BRB Arachis hypogaea HOM05D004050 ORTHO05D005162 4.1e-13 77.0 46 84.8
VMungo0540G1292 Vigna mungo HOM05D004050 ORTHO05D005162 1.5e-10 68.6 46 76.1
arahy.Tifrunner.gnm1.ann1.FXC0UE Arachis hypogaea HOM05D004050 ORTHO05D013487 1.9e-10 68.2 47 76.6
Glyma.17G102000 Glycine max HOM05D004050 ORTHO05D005162 1.9e-10 68.2 46 73.9
Lj1g0013952 Lotus japonicus HOM05D004050 ORTHO05D005162 5.6e-10 66.6 46 73.9
Lalb_Chr05g0217801 Lupinus albus HOM05D004050 ORTHO05D005162 5.6e-10 66.6 46 71.7
arahy.Tifrunner.gnm1.ann1.4GFI35 Arachis hypogaea HOM05D004050 ORTHO05D005162 7.3e-10 66.2 46 71.7
arahy.Tifrunner.gnm1.ann1.LKP54T Arachis hypogaea HOM05D004050 ORTHO05D005162 7.3e-10 66.2 43 79.1
Glyma.19G252800 Glycine max HOM05D004050 ORTHO05D005162 7.3e-10 66.2 46 73.9
Phvul.006G109900 Phaseolus vulgaris HOM05D004050 ORTHO05D005162 7.3e-10 66.2 46 73.9
Haze_19347 Corylus avellana HOM05D004050 ORTHO05D005162 1.2e-09 65.5 46 69.6
QL11p030149 Quercus lobata HOM05D004050 ORTHO05D005162 1.2e-09 65.5 45 68.9
arahy.Tifrunner.gnm1.ann1.T01U3X Arachis hypogaea HOM05D004050 ORTHO05D005162 1.6e-09 65.1 46 69.6
Medtr7g116920 Medicago truncatula HOM05D004050 ORTHO05D005162 2.1e-09 64.7 42 76.2
TPR.G18216 Trifolium pratense HOM05D004050 ORTHO05D005162 2.1e-09 64.7 42 76.2
TPR.G4745 Trifolium pratense HOM05D004050 ORTHO05D005162 2.1e-09 64.7 42 76.2
arahy.Tifrunner.gnm1.ann1.90L2UZ Arachis hypogaea HOM05D004050 ORTHO05D005162 2.8e-09 64.3 42 73.8
arahy.Tifrunner.gnm1.ann1.J8UMPC Arachis hypogaea HOM05D004050 ORTHO05D013487 2.8e-09 64.3 46 73.9
Ca_09490_v3 Cicer arietinum L. HOM05D004050 ORTHO05D005162 2.8e-09 64.3 42 73.8
Nn2g12429 Nelumbo nucifera HOM05D004050 ORTHO05D005162 4.7e-09 63.5 42 71.4
Dinv43889 Davidia involucrata HOM05D004050 ORTHO05D005162 1.1e-08 62.4 46 65.2
Lj9A592T69 Lonicera japonica HOM05D004050 ORTHO05D005162 1.1e-08 62.4 46 60.9
Nn8g40347 Nelumbo nucifera HOM05D004050 ORTHO05D005162 1.1e-08 62.4 42 69.0
GSVIVG01027043001 Vitis vinifera HOM05D004050 ORTHO05D005162 1.1e-08 62.4 42 69.0
Oeu036584.1 Olea europaea HOM05D004050 ORTHO05D005162 1.4e-08 62.0 46 65.2
Psat3g003960 Pisum sativum HOM05D004050 ORTHO05D005162 1.4e-08 62.0 42 71.4
Potri.014G094300 Populus trichocarpa HOM05D004050 ORTHO05D005162 1.4e-08 62.0 46 63.0
Aqoxy7G00205 Aquilegia oxysepala HOM05D004050 ORTHO05D005162 1.8e-08 61.6 46 60.9
CiPaw.06G050500 Carya illinoinensis HOM05D004050 ORTHO05D005162 1.8e-08 61.6 46 65.2
Gohir.A11G094100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 2.4e-08 61.2 46 63.0
COL.COLO4_27283 Corchorus olitorius HOM05D004050 ORTHO05D005162 3.1e-08 60.8 46 63.0
Sed0000372 Sechium edule HOM05D004050 ORTHO05D005162 3.1e-08 60.8 42 64.3
Sed0001564 Sechium edule HOM05D004050 ORTHO05D005162 3.1e-08 60.8 42 64.3
EL10Ac1g00318 Beta vulgaris HOM05D004050 ORTHO05D005162 4.0e-08 60.5 46 60.9
ClCG02G014060 Citrullus lanatus HOM05D004050 ORTHO05D005162 4.0e-08 60.5 44 59.1
MD13G1191700 Malus domestica HOM05D004050 ORTHO05D005162 5.2e-08 60.1 42 64.3
Manes.01G249700 Manihot esculenta HOM05D004050 ORTHO05D005162 5.2e-08 60.1 42 66.7
Actinidia02806 Actinidia chinensis HOM05D004050 ORTHO05D005162 6.8e-08 59.7 46 60.9
PGR004G0443 Punica granatum HOM05D004050 ORTHO05D005162 8.9e-08 59.3 46 63.0
Cc02_g38930 Coffea canephora HOM05D004050 ORTHO05D005162 1.2e-07 58.9 46 60.9
MD01G1224600 Malus domestica HOM05D004050 ORTHO05D005162 1.2e-07 58.9 42 61.9
TAR375G0239 Trochodendron aralioides HOM05D004050 ORTHO05D005162 1.2e-07 58.9 46 60.9
vmacro13201 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 1.2e-07 58.9 46 63.0
HanXRQChr17g0562601 Helianthus annuus HOM05D004050 ORTHO05D005162 1.5e-07 58.5 46 60.9
MBI07_g20434_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 1.5e-07 58.5 46 56.5
Thecc.01G348200 Theobroma cacao HOM05D004050 ORTHO05D005162 1.5e-07 58.5 46 58.7
TWI14G0799 Tripterygium wilfordii HOM05D004050 ORTHO05D005162 1.5e-07 58.5 46 60.9
arahy.Tifrunner.gnm1.ann1.857NE4 Arachis hypogaea HOM05D015654 ORTHO05D013487 2.0e-07 58.2 46 69.6
CsaV3_5G006110 Cucumis sativus L. HOM05D004050 ORTHO05D005162 2.0e-07 58.2 44 56.8
Gohir.D11G099100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 2.0e-07 58.2 46 60.9
Cpa.g.sc194.16 Carica papaya HOM05D004050 ORTHO05D005162 2.6e-07 57.8 46 60.9
CDE10G0991 Ceratophyllum demersum HOM05D004050 ORTHO05D005162 2.6e-07 57.8 42 64.3
Lsat_1_v5_gn_4_33601 Lactuca sativa HOM05D004050 ORTHO05D005162 2.6e-07 57.8 46 58.7
arahy.Tifrunner.gnm1.ann1.IV9FN9 Arachis hypogaea HOM05D004050 ORTHO05D013487 3.4e-07 57.4 42 71.4
arahy.Tifrunner.gnm1.ann1.K2G0UT Arachis hypogaea HOM05D004050 ORTHO05D005162 3.4e-07 57.4 46 65.2
MELO3C011748.2 Cucumis melo HOM05D004050 ORTHO05D005162 3.4e-07 57.4 44 54.5
Duzib138G1937 Durio zibethinus HOM05D004050 ORTHO05D005162 4.4e-07 57.0 46 56.5
Hma1.2p1_0384F.1_g140990 Hydrangea macrophylla HOM05D004050 ORTHO05D005162 4.4e-07 57.0 42 61.9
arahy.Tifrunner.gnm1.ann1.4K0S50 Arachis hypogaea HOM05D004050 ORTHO05D013487 5.8e-07 56.6 46 67.4
AUR62004446 Chenopodium quinoa HOM05D004050 ORTHO05D005162 5.8e-07 56.6 42 61.9
Eucgr.F04376 Eucalyptus grandis HOM05D004050 ORTHO05D005162 5.8e-07 56.6 46 58.7
arahy.Tifrunner.gnm1.ann1.KNB6WM Arachis hypogaea HOM05D004050 ORTHO05D005162 9.9e-07 55.8 37 75.7
RcHm_v2.0_Chr4g0416511 Rosa chinensis HOM05D004050 ORTHO05D005162 9.9e-07 55.8 42 61.9
arahy.Tifrunner.gnm1.ann1.7SIQ0Z Arachis hypogaea HOM05D004050 ORTHO05D005162 1.3e-06 55.5 37 73.0
Prupe.1G011800 Prunus persica HOM05D004050 ORTHO05D005162 1.3e-06 55.5 46 54.3
arahy.Tifrunner.gnm1.ann1.6CNS1E Arachis hypogaea HOM05D004050 ORTHO05D005162 1.7e-06 55.1 45 68.9
arahy.Tifrunner.gnm1.ann1.W30CM7 Arachis hypogaea HOM05D004050 ORTHO05D013487 1.7e-06 55.1 46 65.2
CSS0013339 Camellia sinensis var. sinensis HOM05D004050 ORTHO05D005162 1.7e-06 55.1 42 59.5
arahy.Tifrunner.gnm1.ann1.6RE2SZ Arachis hypogaea HOM05D004050 ORTHO05D085035 2.2e-06 54.7 37 70.3
ECA234G2549 Erigeron canadensis HOM05D004050 ORTHO05D005162 2.2e-06 54.7 46 56.5
RcHm_v2.0_Chr6g0268411 Rosa chinensis HOM05D004050 ORTHO05D005162 2.2e-06 54.7 42 59.5
unitig_747.g21326 Utricularia gibba HOM05D004050 ORTHO05D005162 2.2e-06 54.7 46 56.5
DCAR_006962 Daucus carota HOM05D004050 ORTHO05D005162 2.9e-06 54.3 46 56.5
SGA_v2.0_scaffold548G52849 Striga asiatica HOM05D004050 ORTHO05D005162 2.9e-06 54.3 46 58.7
SGA_v2.0_scaffold5G02982 Striga asiatica HOM05D004050 ORTHO05D005162 2.9e-06 54.3 46 58.7
Migut.B01830 Erythranthe guttata HOM05D004050 ORTHO05D005162 4.9e-06 53.5 46 56.5
FvH4_2g10710 Fragaria vesca HOM05D004050 ORTHO05D005162 4.9e-06 53.5 42 59.5
FAN24G2599 Fragaria x ananassa HOM05D004050 ORTHO05D005162 4.9e-06 53.5 42 59.5
Nitab4.5_0000305g0180 Nicotiana tabacum HOM05D004050 ORTHO05D005162 4.9e-06 53.5 46 54.3
RcHm_v2.0_Chr7g0217091 Rosa chinensis HOM05D004050 ORTHO05D005162 6.4e-06 53.1 42 57.1
MSTRG.20884 Avicennia marina HOM05D004050 ORTHO05D005162 8.4e-06 52.8 46 56.5
Ciclev10021944m.g Citrus clementina HOM05D004050 ORTHO05D005162 8.4e-06 52.8 46 54.3


User provided reference genes

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