Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 9.4e-167 590.1 296 100.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 3.3e-164 581.6 296 99.0
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 5.4e-114 414.8 309 71.8
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 8.6e-112 407.5 309 70.2
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 3.3e-111 405.6 305 70.2
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.7e-110 401.7 311 70.7
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 2.9e-107 392.5 297 69.7
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.4e-106 389.4 309 69.3
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 5.6e-103 378.3 311 66.6
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.2e-100 370.5 288 69.1
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.2e-93 345.1 303 59.7
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.1e-90 337.4 296 59.1
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 4.2e-90 335.5 296 60.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 4.2e-90 335.5 292 60.3
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.2e-89 334.0 296 58.1
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-89 334.0 290 60.7
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 2.1e-89 333.2 296 58.4
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 3.5e-89 332.4 287 60.6
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 6.0e-89 331.6 282 59.2
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.0e-88 330.9 289 59.2
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.3e-88 329.7 288 59.7
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.9e-88 328.9 302 57.6
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.9e-88 328.9 289 61.6
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 6.6e-88 328.2 295 57.6
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.5e-87 326.2 282 59.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.3e-87 325.9 277 61.0
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 5.6e-87 325.1 295 60.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 7.3e-87 324.7 282 59.2
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.3e-86 323.9 297 57.9
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.6e-86 323.6 273 60.1
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.1e-86 323.2 296 59.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.1e-86 323.2 295 60.0
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 4.8e-86 322.0 307 56.7
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 8.1e-86 321.2 311 57.2
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.1e-85 320.9 273 60.1
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.4e-85 319.7 273 59.7
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 3.1e-85 319.3 309 57.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 5.3e-85 318.5 299 58.9
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.2e-84 317.4 298 58.1
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.6e-84 316.2 289 59.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 4.5e-84 315.5 272 59.6
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.5e-84 315.5 288 58.7
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.8e-84 315.1 273 58.6
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.3e-83 313.9 282 55.7
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.7e-83 313.5 288 57.6
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 2.2e-83 313.2 274 58.0
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 4.9e-83 312.0 294 56.1
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.1e-82 310.8 286 57.3
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 1.4e-82 310.5 286 57.0
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.4e-82 309.7 302 55.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.4e-82 309.7 289 58.1
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 7.1e-82 308.1 280 58.6
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 9.3e-82 307.8 296 56.4
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 9.3e-82 307.8 294 55.4
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.2e-81 307.4 274 59.1
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.1e-81 306.6 282 56.7
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 3.5e-81 305.8 295 56.3
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.3e-80 303.9 314 54.1
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 2.3e-80 303.1 287 55.7
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 8.7e-80 301.2 273 57.1
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.9e-79 300.1 273 59.7
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 3.3e-79 299.3 291 55.0
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 9.6e-79 297.7 327 52.0
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 2.8e-78 296.2 292 55.1
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.6e-78 295.8 296 53.4
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 8.1e-78 294.7 282 55.3
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 4.5e-76 288.9 293 51.5
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 4.5e-76 288.9 288 53.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 5.8e-76 288.5 289 54.3
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 7.6e-76 288.1 306 52.9
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 7.6e-76 288.1 288 53.5
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 2.2e-75 286.6 298 52.0
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-74 283.1 283 54.4
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 2.7e-73 279.6 277 56.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.0e-72 277.7 263 55.5
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 2.3e-72 276.6 289 54.3
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 3.0e-72 276.2 297 52.5
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 3.9e-72 275.8 294 51.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 5.1e-72 275.4 285 51.9
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.8e-70 269.6 272 53.3
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.7e-70 269.2 289 51.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 4.8e-70 268.9 294 49.7
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.8e-69 266.9 216 62.5
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.2e-65 254.2 300 49.7
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.6e-65 253.8 245 58.0
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 3.1e-61 239.6 293 49.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 3.4e-60 236.1 335 43.3
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 5.9e-60 235.3 178 66.3
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.9e-59 233.0 271 47.6
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 8.5e-59 231.5 278 47.8
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 4.2e-58 229.2 303 45.2
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 7.9e-57 224.9 169 62.7
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.0e-56 224.6 183 60.7
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.5e-52 210.7 313 41.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.0e-52 210.3 288 40.6
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.5e-52 209.1 154 64.9
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.0e-51 208.0 279 45.9
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.3e-51 207.6 294 42.9
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.4e-50 204.1 284 44.0
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 9.4e-50 201.4 283 42.0
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.0e-48 198.0 120 79.2
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.0e-48 198.0 120 79.2
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 2.3e-48 196.8 153 64.1
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.0e-43 181.4 284 40.1
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 7.2e-42 175.3 274 43.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 7.2e-42 175.3 297 40.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.6e-41 174.1 102 79.4
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.6e-41 172.9 315 38.4
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.5e-39 167.5 285 35.1
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 5.7e-39 165.6 293 39.6
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 4.8e-38 162.5 102 72.5
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 8.2e-38 161.8 291 37.1
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 2.4e-37 160.2 172 58.7
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 4.1e-37 159.5 95 78.9
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.2e-36 157.9 285 37.2
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.0e-36 157.1 307 35.2
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.0e-36 157.1 211 44.5
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.0e-36 157.1 277 40.1
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.3e-35 154.5 287 37.6
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.5e-35 151.8 110 60.9
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 7.2e-34 148.7 215 42.8
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 9.7e-31 138.3 189 42.9
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.7e-30 136.3 179 46.9
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.2e-30 135.2 208 40.4
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 7.7e-28 128.6 158 46.2
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.0e-24 118.2 102 54.9
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 9.8e-23 111.7 109 58.7
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 7.2e-18 95.5 199 36.7
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.0e-17 92.0 141 42.6
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 1.0e-16 91.7 52 90.4
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.8e-16 90.9 50 84.0
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.3e-16 90.5 120 43.3
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 4.0e-16 89.7 74 66.2
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 8.8e-16 88.6 52 75.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.3e-11 73.9 99 39.4
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 4.7e-09 66.2 62 59.7
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 6.1e-09 65.9 60 61.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.0e-08 65.1 50 72.0
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.3e-06 58.2 67 44.8


User provided reference genes

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